RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 ADAM30Q9UKF2 790 aa12.15□□□□□ -0.46
HMGA1-206ENST00000478214 FOXA2Q9Y261 457 aaPredicted RBP12.15□□□□□ -0.46
HMGA1-206ENST00000478214 CCL24O00175 119 aa12.14□□□□□ -0.47
HMGA1-206ENST00000478214 SULT1C2O00338 296 aa12.14□□□□□ -0.47
HMGA1-206ENST00000478214 RGS5O15539 181 aa12.14□□□□□ -0.47
HMGA1-206ENST00000478214 SAA1P0DJI8 122 aaPredicted RBP12.14□□□□□ -0.47
HMGA1-206ENST00000478214 ACTBL2Q562R1 376 aa12.14□□□□□ -0.47
HMGA1-206ENST00000478214 ZNF818PQ6ZRF7 136 aa12.14□□□□□ -0.47
HMGA1-206ENST00000478214 LAX1Q8IWV1 398 aa12.14□□□□□ -0.47
HMGA1-206ENST00000478214 TCTEX1D1Q8N7M0 179 aa12.14□□□□□ -0.47
HMGA1-206ENST00000478214 ZNF491Q8N8L2 437 aa12.14□□□□□ -0.47
HMGA1-206ENST00000478214 ZBTB34Q8NCN2 500 aa12.14□□□□□ -0.47
HMGA1-206ENST00000478214 OR4S2Q8NH73 311 aa12.14□□□□□ -0.47
HMGA1-206ENST00000478214 DYNC2LI1Q8TCX1 351 aa12.14□□□□□ -0.47
HMGA1-206ENST00000478214 ABHD1Q96SE0 405 aa12.14□□□□□ -0.47
HMGA1-206ENST00000478214 GNB4Q9HAV0 340 aa12.14□□□□□ -0.47
HMGA1-206ENST00000478214 PRKDCP78527 4128 aaKnown RBP12.13□□□□□ -0.47
HMGA1-206ENST00000478214 H3BMQ9 156 aa12.13□□□□□ -0.47
HMGA1-206ENST00000478214 WIPF1O43516 503 aa12.13□□□□□ -0.47
HMGA1-206ENST00000478214 NOL3O60936 208 aaKnown RBP12.13□□□□□ -0.47
HMGA1-206ENST00000478214 GNRHRP30968 328 aa12.13□□□□□ -0.47
HMGA1-206ENST00000478214 RCVRNP35243 200 aa12.13□□□□□ -0.47
HMGA1-206ENST00000478214 PRSS8Q16651 343 aa12.13□□□□□ -0.47
HMGA1-206ENST00000478214 KPRPQ5T749 579 aaPredicted RBP12.13□□□□□ -0.47
HMGA1-206ENST00000478214 VKORC1L1Q8N0U8 176 aa12.13□□□□□ -0.47
HMGA1-206ENST00000478214 C4orf3Q8WVX3 66 aa12.13□□□□□ -0.47
HMGA1-206ENST00000478214 MOB3AQ96BX8 217 aa12.13□□□□□ -0.47
HMGA1-206ENST00000478214 ISOC1Q96CN7 298 aa12.13□□□□□ -0.47
HMGA1-206ENST00000478214 UBE2E2Q96LR5 201 aa12.13□□□□□ -0.47
HMGA1-206ENST00000478214 OR5B12Q96R08 314 aa12.13□□□□□ -0.47
HMGA1-206ENST00000478214 CCDC59Q9P031 241 aaKnown RBP12.13□□□□□ -0.47
HMGA1-206ENST00000478214 SCOCQ9UIL1 159 aa12.13□□□□□ -0.47
HMGA1-206ENST00000478214 VSIG4Q9Y279 399 aa12.13□□□□□ -0.47
HMGA1-206ENST00000478214 RAMP3O60896 148 aa12.12□□□□□ -0.47
HMGA1-206ENST00000478214 TNXAQ16473 311 aa12.12□□□□□ -0.47
HMGA1-206ENST00000478214 OR5M8Q8NGP6 311 aa12.12□□□□□ -0.47
HMGA1-206ENST00000478214 OR6F1Q8NGZ6 308 aa12.12□□□□□ -0.47
HMGA1-206ENST00000478214 OR52I2Q8NH67 350 aa12.12□□□□□ -0.47
HMGA1-206ENST00000478214 MS4A10Q96PG2 267 aa12.12□□□□□ -0.47
HMGA1-206ENST00000478214 FXYD6Q9H0Q3 95 aa12.12□□□□□ -0.47
HMGA1-206ENST00000478214 ZNF430Q9H8G1 570 aaPredicted RBP12.12□□□□□ -0.47
HMGA1-206ENST00000478214 KLK11Q9UBX7 282 aa12.12□□□□□ -0.47
HMGA1-206ENST00000478214 CEPT1Q9Y6K0 416 aa12.12□□□□□ -0.47
HMGA1-206ENST00000478214 TPPPO94811 219 aa12.11□□□□□ -0.47
HMGA1-206ENST00000478214 PRB2P02812 416 aaPredicted RBP12.11□□□□□ -0.47
HMGA1-206ENST00000478214 KIR2DS2P43631 304 aa12.11□□□□□ -0.47
HMGA1-206ENST00000478214 RAB25P57735 213 aa12.11□□□□□ -0.47
HMGA1-206ENST00000478214 ASPHD1Q5U4P2 390 aa12.11□□□□□ -0.47
HMGA1-206ENST00000478214 PYHIN1Q6K0P9 492 aa12.11□□□□□ -0.47
HMGA1-206ENST00000478214 SPAG16Q8N0X2 631 aa12.11□□□□□ -0.47
HMGA1-206ENST00000478214 OR5T1Q8NG75 326 aa12.11□□□□□ -0.47
HMGA1-206ENST00000478214 OR51H1Q8NH63 302 aa12.11□□□□□ -0.47
HMGA1-206ENST00000478214 RCC1LQ96I51 464 aaKnown RBP12.11□□□□□ -0.47
HMGA1-206ENST00000478214 TNCP24821 2201 aa12.1□□□□□ -0.47
HMGA1-206ENST00000478214 MSGN1A6NI15 193 aa12.1□□□□□ -0.47
HMGA1-206ENST00000478214 I3L521 148 aa12.1□□□□□ -0.47
HMGA1-206ENST00000478214 M0QYG6 137 aa12.1□□□□□ -0.47
HMGA1-206ENST00000478214 APELAP0DMC3 54 aa12.1□□□□□ -0.47
HMGA1-206ENST00000478214 TSPAN5P62079 268 aa12.1□□□□□ -0.47
HMGA1-206ENST00000478214 CATR1Q13166 79 aa12.1□□□□□ -0.47
HMGA1-206ENST00000478214 C10orf55Q5SWW7 151 aa12.1□□□□□ -0.47
HMGA1-206ENST00000478214 AADACL3Q5VUY0 350 aa12.1□□□□□ -0.47
HMGA1-206ENST00000478214 SSX9Q7RTT3 188 aa12.1□□□□□ -0.47
HMGA1-206ENST00000478214 OR11H1Q8NG94 326 aa12.1□□□□□ -0.47
HMGA1-206ENST00000478214 SRSF12Q8WXF0 261 aaKnown RBP12.1□□□□□ -0.47
HMGA1-206ENST00000478214 RHOVQ96L33 236 aa12.1□□□□□ -0.47
HMGA1-206ENST00000478214 SLIRPQ9GZT3 109 aaKnown RBP12.1□□□□□ -0.47
HMGA1-206ENST00000478214 MTFP1Q9UDX5 166 aa12.1□□□□□ -0.47
HMGA1-206ENST00000478214 RBFOX2O43251 390 aaKnown RBP eCLIP12.09□□□□□ -0.471e-11■■□□□ 12.4
HMGA1-206ENST00000478214 PGLYRP1O75594 196 aaPredicted RBP12.09□□□□□ -0.47
HMGA1-206ENST00000478214 OR2A4O95047 310 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 RLN1P04808 185 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 CD40LGP29965 261 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 TPPP2P59282 170 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 DGCR2P98153 550 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 RUNX1Q01196 453 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 FHL3Q13643 280 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 PDLIM3Q53GG5 364 aaPredicted RBP12.09□□□□□ -0.47
HMGA1-206ENST00000478214 VAX1Q5SQQ9 334 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 FOXB2Q5VYV0 432 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 MMD2Q8IY49 270 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 PUSL1Q8N0Z8 303 aaKnown RBP12.09□□□□□ -0.47
HMGA1-206ENST00000478214 POC5Q8NA72 575 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 C15orf40Q8WUR7 153 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 BORCS5Q969J3 196 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 OR2A7Q96R45 310 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 PHB2Q99623 299 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 TINAGL1Q9GZM7 467 aaPredicted RBP12.09□□□□□ -0.47
HMGA1-206ENST00000478214 C6orf62Q9GZU0 229 aaPredicted RBP12.09□□□□□ -0.47
HMGA1-206ENST00000478214 ALX4Q9H161 411 aaPredicted RBP12.09□□□□□ -0.47
HMGA1-206ENST00000478214 ZNF355PQ9NSJ1 428 aa12.09□□□□□ -0.47
HMGA1-206ENST00000478214 GPR31O00270 319 aa12.08□□□□□ -0.48
HMGA1-206ENST00000478214 CREBL2O60519 120 aaPredicted RBP12.08□□□□□ -0.48
HMGA1-206ENST00000478214 ACTL6BO94805 426 aa12.08□□□□□ -0.48
HMGA1-206ENST00000478214 KBTBD11O94819 623 aa12.08□□□□□ -0.48
HMGA1-206ENST00000478214 DUS4LO95620 317 aaKnown RBP12.08□□□□□ -0.48
HMGA1-206ENST00000478214 HRASP01112 189 aa12.08□□□□□ -0.48
HMGA1-206ENST00000478214 IGHV3-11P01762 117 aa12.08□□□□□ -0.48
HMGA1-206ENST00000478214 TRGV3P03979 118 aa12.08□□□□□ -0.48
HMGA1-206ENST00000478214 CD3DP04234 171 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 146.7 ms