RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 Q8N7P7 452 aa15.77■□□□□ 0.11
VIM-203ENST00000469543 IGF2RP11717 2491 aa15.77■□□□□ 0.11
VIM-203ENST00000469543 IFNA10P01566 189 aa15.76■□□□□ 0.11
VIM-203ENST00000469543 TRGC2P03986 189 aa15.76■□□□□ 0.11
VIM-203ENST00000469543 OPN1MWP04001 364 aa15.76■□□□□ 0.11
VIM-203ENST00000469543 IFNA4P05014 189 aa15.76■□□□□ 0.11
VIM-203ENST00000469543 OPN1MW2P0DN77 364 aa15.76■□□□□ 0.11
VIM-203ENST00000469543 OPN1MW3P0DN78 364 aa15.76■□□□□ 0.11
VIM-203ENST00000469543 TUBG1P23258 451 aa15.76■□□□□ 0.11
VIM-203ENST00000469543 C4orf17Q53FE4 359 aa15.76■□□□□ 0.11
VIM-203ENST00000469543 C1orf185Q5T7R7 199 aa15.76■□□□□ 0.11
VIM-203ENST00000469543 WDR25Q64LD2 544 aaPredicted RBP15.76■□□□□ 0.11
VIM-203ENST00000469543 PINX1Q96BK5 328 aaKnown RBP15.76■□□□□ 0.11
VIM-203ENST00000469543 TUBG2Q9NRH3 451 aa15.76■□□□□ 0.11
VIM-203ENST00000469543 KIAA0141Q14154 515 aaPredicted RBP15.76■□□□□ 0.11
VIM-203ENST00000469543 EDARADDQ8WWZ3 215 aa15.76■□□□□ 0.11
VIM-203ENST00000469543 PATZ1Q9HBE1 687 aaKnown RBP15.76■□□□□ 0.11
VIM-203ENST00000469543 AURKAIP1Q9NWT8 199 aaPredicted RBP15.76■□□□□ 0.11
VIM-203ENST00000469543 DYSFO75923 2080 aa15.76■□□□□ 0.11
VIM-203ENST00000469543 ATRXP46100 2492 aa15.76■□□□□ 0.11
VIM-203ENST00000469543 IGHV1-46P01743 117 aa15.75■□□□□ 0.11
VIM-203ENST00000469543 MEF2BQ02080 365 aaPredicted RBP15.75■□□□□ 0.11
VIM-203ENST00000469543 RTP5Q14D33 572 aa15.75■□□□□ 0.11
VIM-203ENST00000469543 NECAP1Q8NC96 275 aa15.75■□□□□ 0.11
VIM-203ENST00000469543 TMEM170AQ8WVE7 144 aa15.75■□□□□ 0.11
VIM-203ENST00000469543 SDF2L1Q9HCN8 221 aa15.75■□□□□ 0.11
VIM-203ENST00000469543 A8MXE2 369 aa15.75■□□□□ 0.11
VIM-203ENST00000469543 CCKARP32238 428 aa15.75■□□□□ 0.11
VIM-203ENST00000469543 TCF23Q7RTU1 214 aa15.75■□□□□ 0.11
VIM-203ENST00000469543 OR51G1Q8NGK1 321 aa15.75■□□□□ 0.11
VIM-203ENST00000469543 OR4A16Q8NH70 328 aa15.75■□□□□ 0.11
VIM-203ENST00000469543 HEYLQ9NQ87 328 aaPredicted RBP15.75■□□□□ 0.11
VIM-203ENST00000469543 A0A087WWC5 75 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 SAA2-SAA4A0A096LPE2 208 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 YPEL1O60688 119 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 CLN5O75503 358 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 HPRT1P00492 218 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 SAA2P0DJI9 122 aaPredicted RBP15.74■□□□□ 0.11
VIM-203ENST00000469543 MAS1LP35410 378 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 NDUFA6P56556 154 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 TNFAIP6P98066 277 aaPredicted RBP15.74■□□□□ 0.11
VIM-203ENST00000469543 ADIRFQ15847 76 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 MALSU1Q96EH3 234 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 YPEL2Q96QA6 119 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 SMIM7Q9BQ49 75 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 JPT1Q9UK76 154 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 RAI1Q7Z5J4 1906 aaPredicted RBP15.74■□□□□ 0.11
VIM-203ENST00000469543 ABCA4P78363 2273 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 PAGE4O60829 102 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 CD1BP29016 333 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 PDZD11Q5EBL8 140 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 GFI1BQ5VTD9 330 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 CENPVQ7Z7K6 275 aaPredicted RBP15.74■□□□□ 0.11
VIM-203ENST00000469543 LYG1Q8N1E2 194 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 FAM169BQ8N8A8 192 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 OR5T1Q8NG75 326 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 OR4F5Q8NH21 305 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 OR4F4Q96R69 305 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 TMEM204Q9BSN7 226 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 TMEM140Q9NV12 185 aa15.74■□□□□ 0.11
VIM-203ENST00000469543 IGLV3-9A0A075B6K5 115 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 UBE2G2P60604 165 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 SPNS3Q6ZMD2 512 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 CISD2Q8N5K1 135 aaKnown RBP15.73■□□□□ 0.11
VIM-203ENST00000469543 PRSS33Q8NF86 280 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 SDSLQ96GA7 329 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 ABHD17AQ96GS6 310 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 S1PR3Q99500 378 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 METTL1Q9UBP6 276 aaKnown RBP15.73■□□□□ 0.11
VIM-203ENST00000469543 IFITM10A6NMD0 228 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 AP4M1O00189 453 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 CGB3P0DN86 165 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 CGB7P0DN87 165 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 CD40P25942 277 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 CFHR2P36980 270 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 RELBQ01201 579 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 IGF2-ASQ6U949 168 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 ZNF709Q8N972 641 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 PLXNB1O43157 2135 aa15.73■□□□□ 0.11
VIM-203ENST00000469543 PARD6GQ9BYG4 376 aaPredicted RBP15.72■□□□□ 0.11
VIM-203ENST00000469543 DOK5Q9P104 306 aa15.72■□□□□ 0.11
VIM-203ENST00000469543 F2RL2O00254 374 aa15.72■□□□□ 0.11
VIM-203ENST00000469543 GNB2P62879 340 aa15.72■□□□□ 0.11
VIM-203ENST00000469543 MZT1Q08AG7 82 aa15.72■□□□□ 0.11
VIM-203ENST00000469543 CIB3Q96Q77 187 aaPredicted RBP15.72■□□□□ 0.11
VIM-203ENST00000469543 HINT2Q9BX68 163 aa15.72■□□□□ 0.11
VIM-203ENST00000469543 LAMP3Q9UQV4 416 aa15.72■□□□□ 0.11
VIM-203ENST00000469543 TMPRSS2O15393 492 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 HIST1H2BKO60814 126 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 HIST1H2BJP06899 126 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 HIST1H2BOP23527 126 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 HIST1H2BBP33778 126 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 TIMP3P35625 211 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 HIST1H2BDP58876 126 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 HIST1H2BCP62807 126 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 PAX5Q02548 391 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 HIST2H2BEQ16778 126 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.71■□□□□ 0.11
VIM-203ENST00000469543 WFDC8Q8IUA0 241 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 HIST1H2BHQ93079 126 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms