RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 LPAR6P43657 344 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 BRWD1-AS2P59051 145 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 RPL30P62888 115 aaKnown RBP9.58□□□□□ -0.88
USP54-209ENST00000464635 PDLIM3Q53GG5 364 aaPredicted RBP9.58□□□□□ -0.88
USP54-209ENST00000464635 SPAG16Q8N0X2 631 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 BEND2Q8NDZ0 799 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 UBALD1Q8TB05 177 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 TCTEX1D2Q8WW35 142 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 GPR146Q96CH1 333 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 C5orf30Q96GV9 206 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 RAB40CQ96S21 281 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 ARL6Q9H0F7 186 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 TMEM133Q9H2Q1 129 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 PRR13Q9NZ81 148 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 RNF150Q9ULK6 438 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 BOLA1Q9Y3E2 137 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 PPIAL4CA0A0B4J2A2 164 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 KANTRA0A1W2PQU2 76 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 LINC00473A8K010 186 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 TXNL1O43396 289 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 BCL2L11O43521 198 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 FSHBP01225 129 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 GAPDHP04406 335 aaKnown RBP9.57□□□□□ -0.88
USP54-209ENST00000464635 PPIAL4GP0DN37 164 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 PRRX1P54821 245 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 GNB2P62879 340 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 OR52E5Q8NH55 327 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 OR4S2Q8NH73 311 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 OR1S1Q8NH92 325 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 STOML3Q8TAV4 291 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 C22orf15Q8WYQ4 148 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 H1FXQ92522 213 aaKnown RBP9.57□□□□□ -0.88
USP54-209ENST00000464635 DCUN1D4Q92564 292 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 ST6GALNAC6Q969X2 333 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 SSBP3Q9BWW4 388 aaPredicted RBP9.57□□□□□ -0.88
USP54-209ENST00000464635 MMP26Q9NRE1 261 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.57□□□□□ -0.88
USP54-209ENST00000464635 WSB1Q9Y6I7 421 aa9.57□□□□□ -0.88
USP54-209ENST00000464635 NBEAL1Q6ZS30 2694 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 SAA2-SAA4A0A096LPE2 208 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 J3QLI3 93 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 GPR137BO60478 399 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 MMP23AO75900 390 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 IGKV1-5P01602 117 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 SAA2P0DJI9 122 aaPredicted RBP9.56□□□□□ -0.88
USP54-209ENST00000464635 NQO2P16083 231 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 OMGP23515 440 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 NFYBP25208 207 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 MC5RP33032 325 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 AKR1C2P52895 323 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 AP2S1P53680 142 aaPredicted RBP9.56□□□□□ -0.88
USP54-209ENST00000464635 HILS1P60008 231 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 ERVFRD-1P60508 538 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 UBA52P62987 128 aaKnown RBP9.56□□□□□ -0.88
USP54-209ENST00000464635 BAXQ07812 192 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 LRRC37A5PQ49AS3 106 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 NCR3LG1Q68D85 454 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 ZNF680Q8NEM1 530 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 DMBX1Q8NFW5 382 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 OR5AN1Q8NGI8 311 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 ZNF418Q8TF45 676 aaPredicted RBP9.56□□□□□ -0.88
USP54-209ENST00000464635 ARPC5LQ9BPX5 153 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 SLC25A31Q9H0C2 315 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 C7orf69Q9H7B7 122 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 ESM1Q9NQ30 184 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 OR5AC2Q9NZP5 309 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 KPTNQ9Y664 436 aa9.56□□□□□ -0.88
USP54-209ENST00000464635 M0R1X1 148 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 SLC31A2O15432 143 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 JTBO76095 146 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 HRASP01112 189 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 IGLV1-47P01700 117 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 IL6RP08887 468 aaPredicted RBP9.55□□□□□ -0.88
USP54-209ENST00000464635 HKR1P10072 659 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 CCL3L1P16619 93 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 PRTN3P24158 256 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 RPL12P30050 165 aaKnown RBP9.55□□□□□ -0.88
USP54-209ENST00000464635 MIDNQ504T8 468 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 PRAMEF5Q5TYX0 476 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 ZNF429Q86V71 674 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 FOXRED2Q8IWF2 684 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 LYG1Q8N1E2 194 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 ABHD12Q8N2K0 398 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 OR11H6Q8NGC7 330 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 OSR1Q8TAX0 266 aaPredicted RBP9.55□□□□□ -0.88
USP54-209ENST00000464635 LRRC20Q8TCA0 184 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 SMIM8Q96KF7 97 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 CIB3Q96Q77 187 aaPredicted RBP9.55□□□□□ -0.88
USP54-209ENST00000464635 RNF5Q99942 180 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 LYRM2Q9NU23 88 aaPredicted RBP9.55□□□□□ -0.88
USP54-209ENST00000464635 HSPB7Q9UBY9 170 aa9.55□□□□□ -0.88
USP54-209ENST00000464635 RCL1Q9Y2P8 373 aaKnown RBP9.55□□□□□ -0.88
USP54-209ENST00000464635 AMMECR1Q9Y4X0 333 aaPredicted RBP9.55□□□□□ -0.88
USP54-209ENST00000464635 MARCH11A6NNE9 402 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 ENSAO43768 121 aaKnown RBP9.54□□□□□ -0.88
USP54-209ENST00000464635 RAMP3O60896 148 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 TSC22D2O75157 780 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 FOXH1O75593 365 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 CT45A6P0DMU7 189 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 CT45A5P0DMU8 189 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms