RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 FAM90A24PP0C7X0 464 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 C3orf79P0CE67 100 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 GLB1P16278 677 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 ZNF83P51522 516 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 RPL31P62899 125 aaKnown RBP9.79□□□□□ -0.84
CPSF3-202ENST00000460593 MMD2Q8IY49 270 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 TPRX1Q8N7U7 411 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 SPSB4Q96A44 273 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 ALKBH7Q9BT30 221 aaPredicted RBP9.79□□□□□ -0.84
CPSF3-202ENST00000460593 PARD6GQ9BYG4 376 aaPredicted RBP9.79□□□□□ -0.84
CPSF3-202ENST00000460593 PCED1AQ9H1Q7 454 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 SLC45A2Q9UMX9 530 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 WDFY4Q6ZS81 3184 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 A0A1W2PS18 150 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 LNP1A1A4G5 178 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.79□□□□□ -0.84
CPSF3-202ENST00000460593 SYNGR4O95473 234 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 CA1P00915 261 aaPredicted RBP9.79□□□□□ -0.84
CPSF3-202ENST00000460593 IGHV3-13P01766 116 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 IGHV3-7P01780 117 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 NXPH1P58417 271 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 RAC3P60763 192 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 PCOLCEQ15113 449 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 RABEPKQ7Z6M1 372 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 GGNQ86UU5 652 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 VKORC1L1Q8N0U8 176 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 OR4B1Q8NGF8 309 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 RNF2Q99496 336 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 OCIAD1Q9NX40 245 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 IL36BQ9NZH7 164 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 C19orf25Q9UFG5 118 aaPredicted RBP9.79□□□□□ -0.84
CPSF3-202ENST00000460593 ZNF253O75346 499 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 CD99P14209 185 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 HTD2P86397 168 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 RELBQ01201 579 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 GUSBP11Q6P575 273 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 KCNIP2Q9NS61 270 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 UQCR10Q9UDW1 63 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 CBY3A6NI87 242 aa9.78□□□□□ -0.84
CPSF3-202ENST00000460593 OR2H2O95918 312 aa9.78□□□□□ -0.84
CPSF3-202ENST00000460593 IGLV3-19P01714 112 aa9.78□□□□□ -0.84
CPSF3-202ENST00000460593 SRIP30626 198 aa9.78□□□□□ -0.84
CPSF3-202ENST00000460593 LGALS4P56470 323 aa9.78□□□□□ -0.84
CPSF3-202ENST00000460593 TRIP6Q15654 476 aaKnown RBP9.78□□□□□ -0.84
CPSF3-202ENST00000460593 SRSF7Q16629 238 aaKnown RBP eCLIP9.78□□□□□ -0.84
CPSF3-202ENST00000460593 ZC2HC1AQ96GY0 325 aa9.78□□□□□ -0.84
CPSF3-202ENST00000460593 RARRES3Q9UL19 164 aa9.78□□□□□ -0.84
CPSF3-202ENST00000460593 KIAA1549Q9HCM3 1950 aa9.78□□□□□ -0.84
CPSF3-202ENST00000460593 DSPP15924 2871 aaKnown RBP9.78□□□□□ -0.84
CPSF3-202ENST00000460593 C15orf62A8K5M9 175 aa9.78□□□□□ -0.84
CPSF3-202ENST00000460593 B3GALT5-AS1P59052 145 aa9.78□□□□□ -0.84
CPSF3-202ENST00000460593 RFESDQ8TAC1 157 aa9.78□□□□□ -0.84
CPSF3-202ENST00000460593 CD1BP29016 333 aa9.77□□□□□ -0.84
CPSF3-202ENST00000460593 PCBD1P61457 104 aa9.77□□□□□ -0.84
CPSF3-202ENST00000460593 SAPCD1Q5SSQ6 148 aa9.77□□□□□ -0.84
CPSF3-202ENST00000460593 MRPL52Q86TS9 123 aaKnown RBP9.77□□□□□ -0.84
CPSF3-202ENST00000460593 NHLRC2Q8NBF2 726 aa9.77□□□□□ -0.84
CPSF3-202ENST00000460593 SEPSECSQ9HD40 501 aaKnown RBP9.77□□□□□ -0.84
CPSF3-202ENST00000460593 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.77□□□□□ -0.84
CPSF3-202ENST00000460593 ZNF391Q9UJN7 358 aa9.77□□□□□ -0.84
CPSF3-202ENST00000460593 ACTL6BO94805 426 aa9.77□□□□□ -0.85
CPSF3-202ENST00000460593 ATP6V1FQ16864 119 aa9.77□□□□□ -0.85
CPSF3-202ENST00000460593 Q6P435 159 aa9.77□□□□□ -0.85
CPSF3-202ENST00000460593 CXorf67Q86X51 503 aaPredicted RBP9.77□□□□□ -0.85
CPSF3-202ENST00000460593 NIT1Q86X76 327 aa9.77□□□□□ -0.85
CPSF3-202ENST00000460593 PRDM14Q9GZV8 571 aa9.77□□□□□ -0.85
CPSF3-202ENST00000460593 A0A1W2PQM1 296 aa9.77□□□□□ -0.85
CPSF3-202ENST00000460593 DPRXA6NFQ7 191 aa9.77□□□□□ -0.85
CPSF3-202ENST00000460593 C17orf112F2Z3M2 114 aa9.77□□□□□ -0.85
CPSF3-202ENST00000460593 COLCA1Q6ZS62 124 aa9.77□□□□□ -0.85
CPSF3-202ENST00000460593 H2BFWTQ7Z2G1 175 aa9.77□□□□□ -0.85
CPSF3-202ENST00000460593 GMPPAQ96IJ6 420 aaPredicted RBP9.77□□□□□ -0.85
CPSF3-202ENST00000460593 AHCTF1Q8WYP5 2266 aa9.77□□□□□ -0.85
CPSF3-202ENST00000460593 LRP5LA4QPB2 252 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 LINC00473A8K010 186 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 C2CD4DB7Z1M9 353 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 ESDP10768 282 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 FKBP2P26885 142 aaKnown RBP9.76□□□□□ -0.85
CPSF3-202ENST00000460593 TSPOP30536 169 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 SSR4P51571 173 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 UBE2V1Q13404 147 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 Q56UQ5 140 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 AGBL5Q8NDL9 886 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 LOXL4Q96JB6 756 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 NEURL1O76050 574 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 OR9G9P0C7N8 305 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 EPHA8P29322 1005 aaPredicted RBP9.76□□□□□ -0.85
CPSF3-202ENST00000460593 CCL7P80098 99 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 RPEL1Q2QD12 228 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 WDR86Q86TI4 376 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 ABHD12Q8N2K0 398 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 FAM122AQ96E09 287 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 MGST2Q99735 147 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 CLEC7AQ9BXN2 247 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 MS4A5Q9H3V2 200 aa9.76□□□□□ -0.85
CPSF3-202ENST00000460593 KLF3P57682 345 aaPredicted RBP9.75□□□□□ -0.85
CPSF3-202ENST00000460593 PDLIM3Q53GG5 364 aaPredicted RBP9.75□□□□□ -0.85
CPSF3-202ENST00000460593 SYT13Q7L8C5 426 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 OR4C5Q8NGB2 326 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 SF3B5Q9BWJ5 86 aaKnown RBP9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms