RNA–Protein interactions for RNA: ENST00000458516.5

TRIM39-211, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-211ENST00000458516 IGKV1-39P01597 117 aa13.39□□□□□ -0.27
TRIM39-211ENST00000458516 IGKV1D-39P04432 117 aa13.39□□□□□ -0.27
TRIM39-211ENST00000458516 SPNP16150 400 aa13.39□□□□□ -0.27
TRIM39-211ENST00000458516 UBE2MP61081 183 aaKnown RBP13.39□□□□□ -0.27
TRIM39-211ENST00000458516 RPL15P61313 204 aaKnown RBP13.39□□□□□ -0.27
TRIM39-211ENST00000458516 PPP1R1AQ13522 171 aa13.39□□□□□ -0.27
TRIM39-211ENST00000458516 TMEM187Q14656 261 aa13.39□□□□□ -0.27
TRIM39-211ENST00000458516 C11orf88Q6PI97 169 aa13.39□□□□□ -0.27
TRIM39-211ENST00000458516 GLYATL2Q8WU03 294 aa13.39□□□□□ -0.27
TRIM39-211ENST00000458516 TMEM222Q9H0R3 208 aa13.39□□□□□ -0.27
TRIM39-211ENST00000458516 FBXL15Q9H469 300 aa13.39□□□□□ -0.27
TRIM39-211ENST00000458516 KIAA1456Q9P272 454 aa13.39□□□□□ -0.27
TRIM39-211ENST00000458516 C2CD3Q4AC94 2353 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 SH2D7A6NKC9 451 aaPredicted RBP13.38□□□□□ -0.27
TRIM39-211ENST00000458516 M0QZK8 103 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 SLC25A17O43808 307 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 SFT2D2O95562 160 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 SERPINE2P07093 398 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 CRYGBP07316 175 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 H2AFB2P0C5Z0 115 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 OR4E1P0C645 316 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 SAA1P0DJI8 122 aaPredicted RBP13.38□□□□□ -0.27
TRIM39-211ENST00000458516 MECP2P51608 486 aaKnown RBP13.38□□□□□ -0.27
TRIM39-211ENST00000458516 UBE2KP61086 200 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 POU2AF1Q16633 256 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 C5orf64Q2M2E5 130 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 VKORC1L1Q8N0U8 176 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 LHFPL5Q8TAF8 219 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 R3HDM4Q96D70 268 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 ALX4Q9H161 411 aaPredicted RBP13.38□□□□□ -0.27
TRIM39-211ENST00000458516 BEX1Q9HBH7 125 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 TPSG1Q9NRR2 321 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 PRR13Q9NZ81 148 aa13.38□□□□□ -0.27
TRIM39-211ENST00000458516 METTL1Q9UBP6 276 aaKnown RBP13.38□□□□□ -0.27
TRIM39-211ENST00000458516 TET2Q6N021 2002 aaPredicted RBP13.37□□□□□ -0.27
TRIM39-211ENST00000458516 HRASP01112 189 aa13.37□□□□□ -0.27
TRIM39-211ENST00000458516 RPA2P15927 270 aa13.37□□□□□ -0.27
TRIM39-211ENST00000458516 NQO2P16083 231 aa13.37□□□□□ -0.27
TRIM39-211ENST00000458516 VAMP1P23763 118 aa13.37□□□□□ -0.27
TRIM39-211ENST00000458516 RAB25P57735 213 aa13.37□□□□□ -0.27
TRIM39-211ENST00000458516 TRIM16LQ309B1 348 aa13.37□□□□□ -0.27
TRIM39-211ENST00000458516 VMA21Q3ZAQ7 101 aa13.37□□□□□ -0.27
TRIM39-211ENST00000458516 PLET1Q6UQ28 207 aa13.37□□□□□ -0.27
TRIM39-211ENST00000458516 PUSL1Q8N0Z8 303 aaKnown RBP13.37□□□□□ -0.27
TRIM39-211ENST00000458516 ZFAND2BQ8WV99 257 aa13.37□□□□□ -0.27
TRIM39-211ENST00000458516 TAF15Q92804 592 aaKnown RBP eCLIP13.37□□□□□ -0.27
TRIM39-211ENST00000458516 RHOVQ96L33 236 aa13.37□□□□□ -0.27
TRIM39-211ENST00000458516 NPFFR1Q9GZQ6 430 aa13.37□□□□□ -0.27
TRIM39-211ENST00000458516 KCNIP3Q9Y2W7 256 aa13.37□□□□□ -0.27
TRIM39-211ENST00000458516 C9orf170A2RU37 121 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 MARCH11A6NNE9 402 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 CDS2O95674 445 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 ANXA3P12429 323 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 G6PCP35575 357 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 BLCAPP62952 87 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 RELBQ01201 579 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 DHRS2Q13268 280 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 MRGPRG-AS1Q2M3A8 158 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 Q6ZS46 218 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 SSX9Q7RTT3 188 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 LYG2Q86SG7 212 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 TEX45Q8NA69 505 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 SEC22AQ96IW7 307 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 TMEM56Q96MV1 263 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 RASL11BQ9BPW5 248 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 RANBP3Q9H6Z4 567 aaPredicted RBP13.36□□□□□ -0.27
TRIM39-211ENST00000458516 ZNF702PQ9H963 129 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 SIGLEC9Q9Y336 463 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 TMEM56-RWDD3S4R434 201 aa13.36□□□□□ -0.27
TRIM39-211ENST00000458516 SETD2Q9BYW2 2564 aaPredicted RBP13.36□□□□□ -0.27
TRIM39-211ENST00000458516 KBTBD11O94819 623 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 HLA-AP01891 365 aaKnown RBP13.35□□□□□ -0.27
TRIM39-211ENST00000458516 HLA-DRB1P01911 266 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 ERVK-16P61578 105 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 PLGLAQ15195 96 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 RGS21Q2M5E4 152 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 ANKRD55Q3KP44 614 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 C4orf46Q504U0 113 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 OR4A47Q6IF82 309 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 Q6ZSV7 163 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 SELENOHQ8IZQ5 122 aaKnown RBP13.35□□□□□ -0.27
TRIM39-211ENST00000458516 DMBX1Q8NFW5 382 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 CASTOR1Q8WTX7 329 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 AIFM2Q9BRQ8 373 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 MARVELD1Q9BSK0 173 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 TMEM140Q9NV12 185 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 BET1LQ9NYM9 111 aa13.35□□□□□ -0.27
TRIM39-211ENST00000458516 INMT-MINDY4F8WBC2 141 aa13.34□□□□□ -0.27
TRIM39-211ENST00000458516 OR2A4O95047 310 aa13.34□□□□□ -0.27
TRIM39-211ENST00000458516 KRASP01116 189 aa13.34□□□□□ -0.27
TRIM39-211ENST00000458516 IGKV1-5P01602 117 aa13.34□□□□□ -0.27
TRIM39-211ENST00000458516 CRYBA1P05813 215 aa13.34□□□□□ -0.27
TRIM39-211ENST00000458516 IL6RP08887 468 aaPredicted RBP13.34□□□□□ -0.27
TRIM39-211ENST00000458516 RAG2P55895 527 aa13.34□□□□□ -0.27
TRIM39-211ENST00000458516 TMEM268Q5VZI3 342 aa13.34□□□□□ -0.27
TRIM39-211ENST00000458516 LIN54Q6MZP7 749 aa13.34□□□□□ -0.27
TRIM39-211ENST00000458516 Q8N2B8 174 aa13.34□□□□□ -0.27
TRIM39-211ENST00000458516 OR52B4Q8NGK2 314 aa13.34□□□□□ -0.27
TRIM39-211ENST00000458516 VSTM2AQ8TAG5 236 aa13.34□□□□□ -0.27
TRIM39-211ENST00000458516 TMEM167AQ8TBQ9 72 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms