RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 DDB2Q92466 427 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 SCGB3A2Q96PL1 93 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 SLC2A9Q9NRM0 540 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 LIN7CQ9NUP9 197 aaKnown RBP7.01□□□□□ -1.29
SYNE1-214ENST00000454018 C14orf166Q9Y224 244 aaKnown RBP7.01□□□□□ -1.29
SYNE1-214ENST00000454018 PRELID3BQ9Y3B1 194 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 TET2Q6N021 2002 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-214ENST00000454018 LOC102723971A0A1B0GUV8 181 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 A6NDX4 124 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 LINC00473A8K010 186 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 H7C2Y5 167 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 TRIM77I1YAP6 450 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 LYRM1O43325 122 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 TNFSF12O43508 249 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 OR2F2O95006 317 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 RLN1P04808 185 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 CTSDP07339 412 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-214ENST00000454018 TMEM11P17152 192 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 PTTG1IPP53801 180 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 RND3P61587 244 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 ASAH1Q13510 395 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 LY6EQ16553 131 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 CCDC71LQ8N9Z2 235 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 POC5Q8NA72 575 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 OR8H1Q8NGG4 311 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 OR4C13Q8NGP0 309 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 MARCH1Q8TCQ1 289 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 ZFAND2BQ8WV99 257 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 TCTEX1D2Q8WW35 142 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 MRGPRFQ96AM1 343 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 DUX5Q96PT3 197 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 SLC25A21Q9BQT8 299 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-214ENST00000454018 CHIAQ9BZP6 476 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 SLC35D1Q9NTN3 355 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 LINC00854A0A1B0GVQ3 168 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 M0QZK8 103 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 RBFOX2O43251 390 aaKnown RBP eCLIP7□□□□□ -1.29
SYNE1-214ENST00000454018 GPR137BO60478 399 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 CD24P25063 80 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 BTCP35070 178 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 PIGPP57054 158 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 DEFA1P59665 94 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 DEFA3P59666 94 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 PHLDA2Q53GA4 152 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 TMEM219Q86XT9 240 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 Q8N6K4 173 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 TCTEX1D1Q8N7M0 179 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 OR51H1Q8NH63 302 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 OR4S2Q8NH73 311 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 OSR1Q8TAX0 266 aaPredicted RBP7□□□□□ -1.29
SYNE1-214ENST00000454018 CD300LFQ8TDQ1 290 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 RBM14Q96PK6 669 aaKnown RBP7□□□□□ -1.29
SYNE1-214ENST00000454018 RNF5Q99942 180 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 SLC25A33Q9BSK2 321 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 PALMDQ9NP74 551 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 TNFRSF19Q9NS68 423 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 FAM212BQ9NTI7 297 aaPredicted RBP7□□□□□ -1.29
SYNE1-214ENST00000454018 COPZ2Q9P299 210 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 TBC1D24Q9ULP9 559 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 MOB4Q9Y3A3 225 aa7□□□□□ -1.29
SYNE1-214ENST00000454018 PLA2G10O15496 165 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 FGF16O43320 207 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 CHST1O43916 411 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 FCGR3BO75015 233 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 PGLYRP1O75594 196 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-214ENST00000454018 B3GALNT1O75752 331 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 NDUFB6O95139 128 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 SPDEFO95238 335 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 IGKV1-16P04430 117 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 PI3P19957 117 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 F2RP25116 425 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 LINC00205P59089 165 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 RPL30P62888 115 aaKnown RBP6.99□□□□□ -1.29
SYNE1-214ENST00000454018 MMDQ15546 238 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 FBLN7Q53RD9 439 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 C16orf87Q6PH81 154 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 CCBE1Q6UXH8 406 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-214ENST00000454018 TBC1D26Q86UD7 250 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 FLYWCH2Q96CP2 140 aaKnown RBP6.99□□□□□ -1.29
SYNE1-214ENST00000454018 HARBI1Q96MB7 349 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 NPFFR1Q9GZQ6 430 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 C5orf66Q9H5L9 145 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 RANBP3Q9H6Z4 567 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-214ENST00000454018 C1RLQ9NZP8 487 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 GPR132Q9UNW8 380 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 VSIG4Q9Y279 399 aa6.99□□□□□ -1.29
SYNE1-214ENST00000454018 H0Y980 276 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 MPPED1O15442 326 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 NBR2O15453 112 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 CRYZL1O95825 349 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 SLC6A1P30531 599 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 CCR6P51684 374 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 RIPPLY3P57055 190 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 TAS2R31P59538 309 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 HNF4GQ14541 408 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 OR2B11Q5JQS5 317 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 C11orf88Q6PI97 169 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 SPAG16Q8N0X2 631 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 CENPSQ8N2Z9 138 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 GPHA2Q96T91 129 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms