RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 BSCL2Q96G97 398 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-213ENST00000448038 RBFOX3A6NFN3 312 aa6.21□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.21□□□□□ -1.41
SYNE1-213ENST00000448038 C7orf69Q9H7B7 122 aa6.21□□□□□ -1.41
SYNE1-213ENST00000448038 ABCA4P78363 2273 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 TRBV6-7A0A0A0MS04 114 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 A0A1W2PNU3 283 aaPredicted RBP6.21□□□□□ -1.42
SYNE1-213ENST00000448038 TGFAP01135 160 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 ACAA1P09110 424 aaPredicted RBP6.21□□□□□ -1.42
SYNE1-213ENST00000448038 OR10J1P30954 320 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 SLC35B1P78383 322 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 HGFACQ04756 655 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 GTF3AQ92664 365 aaKnown RBP6.21□□□□□ -1.42
SYNE1-213ENST00000448038 RTN4RL2Q86UN3 420 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 MYPOPQ86VE0 399 aaPredicted RBP6.21□□□□□ -1.42
SYNE1-213ENST00000448038 FAM169BQ8N8A8 192 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 MANBALQ9NQG1 85 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 SERTM2A0A1B0GWG4 89 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 A0A1W2PPQ1 181 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 C17orf98A8MV24 154 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 GNG4P50150 75 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 TMEM241Q24JQ0 296 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 TMEM42Q69YG0 159 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 TMEM88Q6PEY1 159 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 SOSTQ9BQB4 213 aa6.21□□□□□ -1.42
SYNE1-213ENST00000448038 RTBDNQ9BSG5 229 aaPredicted RBP6.21□□□□□ -1.42
SYNE1-213ENST00000448038 LYRM2Q9NU23 88 aaPredicted RBP6.21□□□□□ -1.42
SYNE1-213ENST00000448038 REG1AP05451 166 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 HKR1P10072 659 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 CTRB1P17538 263 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 S100A4P26447 101 aaKnown RBP6.2□□□□□ -1.42
SYNE1-213ENST00000448038 RND3P61587 244 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 FXYD3Q14802 87 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 CTRB2Q6GPI1 263 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 C16orf82Q7Z2V1 217 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 SLC35E3Q7Z769 313 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 RSG1Q9BU20 258 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 ALPK3Q96L96 1907 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 CTXND1A0A1B0GTU2 59 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 SIGLEC5O15389 551 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 TNFSF13O75888 250 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 LOXL3P58215 753 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 PRB3Q04118 309 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-213ENST00000448038 OSR1Q8TAX0 266 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-213ENST00000448038 GALNT14Q96FL9 552 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 PXMP4Q9Y6I8 212 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 OTOGLQ3ZCN5 2332 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 HSBP1L1C9JCN9 74 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 UCP1P25874 307 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 NDUFA6P56556 154 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 SERF2P84101 59 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 ZNF146Q15072 292 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 USF2Q15853 346 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-213ENST00000448038 NCMAPQ5T1S8 102 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 SSX7Q7RTT5 188 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 RBM14Q96PK6 669 aaKnown RBP6.2□□□□□ -1.42
SYNE1-213ENST00000448038 CTDSP1Q9GZU7 261 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 C11orf94C9JXX5 98 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 F8VVB4 439 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 F8VWA3 439 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 YPEL1O60688 119 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 MPDU1O75352 247 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 HYPMO75409 117 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 SRSF10O75494 262 aaKnown RBP6.2□□□□□ -1.42
SYNE1-213ENST00000448038 SELLP14151 372 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 CEACAM8P31997 349 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-213ENST00000448038 RND2P52198 227 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 RNF144BQ7Z419 303 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 STXBP6Q8NFX7 210 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 OR4A5Q8NH83 315 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 YPEL2Q96QA6 119 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 MRPL20Q9BYC9 149 aaKnown RBP6.2□□□□□ -1.42
SYNE1-213ENST00000448038 HIGD1AQ9Y241 93 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 AUP1Q9Y679 476 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 CADP27708 2225 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 IGKV1D-13A0A0B4J2D9 117 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 DBX1A6NMT0 343 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 IGKV1-13P0DP09 117 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 COMPP49747 757 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-213ENST00000448038 PAX5Q02548 391 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 OR4C12Q96R67 309 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 CRIM1Q9NZV1 1036 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 CUL9Q8IWT3 2517 aa6.2□□□□□ -1.42
SYNE1-213ENST00000448038 GTF3C1Q12789 2109 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 K7EM74 188 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 IGKV1D-33P01593 117 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 IGKV1-33P01594 117 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 EFNA4P52798 201 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 GAMTQ14353 236 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 ADIPOQQ15848 244 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 MORN2Q502X0 79 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 FBXL15Q9H469 300 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 KIAA2026Q5HYC2 2103 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 IGKV1D-8A0A087WSZ0 117 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 ZNF705GA8MUZ8 300 aaPredicted RBP6.19□□□□□ -1.42
SYNE1-213ENST00000448038 TMEM178BH3BS89 294 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 SCO1O75880 301 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 CXorf1O96002 111 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 LINC00869P0C866 280 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 ZP3P21754 424 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms