RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 NAT1P18440 290 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 ELK1P19419 428 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 KIR2DS2P43631 304 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 TPPP2P59282 170 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 EIF4EBP1Q13541 118 aaPredicted RBP11.81□□□□□ -0.52
LIMS3-201ENST00000437679 PRSS8Q16651 343 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 IDO2Q6ZQW0 420 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 SNX29P2Q8IUI4 249 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 OR1N2Q8NGR9 330 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 OR5H2Q8NGV7 314 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 MS4A10Q96PG2 267 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 PHB2Q99623 299 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 SLA2Q9H6Q3 261 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 SCPEP1Q9HB40 452 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 ZNF355PQ9NSJ1 428 aa11.81□□□□□ -0.52
LIMS3-201ENST00000437679 I3L521 148 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 TNFSF12O43508 249 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 PMP2P02689 132 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 OR8U8P0C7N1 319 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 SAA1P0DJI8 122 aaPredicted RBP11.8□□□□□ -0.52
LIMS3-201ENST00000437679 SSBP2P81877 361 aaPredicted RBP11.8□□□□□ -0.52
LIMS3-201ENST00000437679 ZNF616Q08AN1 781 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 CATR1Q13166 79 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 DYRK1AQ13627 763 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 FHL3Q13643 280 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 TNXAQ16473 311 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 TMEM17Q86X19 198 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 POC5Q8NA72 575 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 OR5T1Q8NG75 326 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 GPX8Q8TED1 209 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 BORCS5Q969J3 196 aa11.8□□□□□ -0.52
LIMS3-201ENST00000437679 AURKAIP1Q9NWT8 199 aaPredicted RBP11.8□□□□□ -0.52
LIMS3-201ENST00000437679 H3BUA1 57 aa11.79□□□□□ -0.52
LIMS3-201ENST00000437679 TRGV3P03979 118 aa11.79□□□□□ -0.52
LIMS3-201ENST00000437679 HOXD3P31249 432 aaPredicted RBP11.79□□□□□ -0.52
LIMS3-201ENST00000437679 RFX2P48378 723 aa11.79□□□□□ -0.52
LIMS3-201ENST00000437679 MRGPRG-AS1Q2M3A8 158 aa11.79□□□□□ -0.52
LIMS3-201ENST00000437679 DHRS11Q6UWP2 260 aa11.79□□□□□ -0.52
LIMS3-201ENST00000437679 CLVS1Q8IUQ0 354 aaPredicted RBP11.79□□□□□ -0.52
LIMS3-201ENST00000437679 MMD2Q8IY49 270 aa11.79□□□□□ -0.52
LIMS3-201ENST00000437679 VSTM2AQ8TAG5 236 aa11.79□□□□□ -0.52
LIMS3-201ENST00000437679 MRAPQ8TCY5 172 aa11.79□□□□□ -0.52
LIMS3-201ENST00000437679 GPHA2Q96T91 129 aa11.79□□□□□ -0.52
LIMS3-201ENST00000437679 ZNF2Q9BSG1 426 aaPredicted RBP11.79□□□□□ -0.52
LIMS3-201ENST00000437679 ZNF430Q9H8G1 570 aaPredicted RBP11.79□□□□□ -0.52
LIMS3-201ENST00000437679 TGP01266 2768 aa11.79□□□□□ -0.52
LIMS3-201ENST00000437679 MSGN1A6NI15 193 aa11.78□□□□□ -0.52
LIMS3-201ENST00000437679 SULT1C2O00338 296 aa11.78□□□□□ -0.52
LIMS3-201ENST00000437679 MPPED1O15442 326 aa11.78□□□□□ -0.52
LIMS3-201ENST00000437679 OR2A4O95047 310 aa11.78□□□□□ -0.52
LIMS3-201ENST00000437679 HRASP01112 189 aa11.78□□□□□ -0.52
LIMS3-201ENST00000437679 LGALS1P09382 135 aaKnown RBP11.78□□□□□ -0.52
LIMS3-201ENST00000437679 HLA-DMAP28067 261 aa11.78□□□□□ -0.52
LIMS3-201ENST00000437679 ZNF818PQ6ZRF7 136 aa11.78□□□□□ -0.52
LIMS3-201ENST00000437679 SPAG16Q8N0X2 631 aa11.78□□□□□ -0.52
LIMS3-201ENST00000437679 OR6F1Q8NGZ6 308 aa11.78□□□□□ -0.52
LIMS3-201ENST00000437679 SRSF12Q8WXF0 261 aaKnown RBP11.78□□□□□ -0.52
LIMS3-201ENST00000437679 OR2A7Q96R45 310 aa11.78□□□□□ -0.52
LIMS3-201ENST00000437679 AIFM2Q9BRQ8 373 aa11.78□□□□□ -0.52
LIMS3-201ENST00000437679 EXTL2Q9UBQ6 330 aa11.78□□□□□ -0.52
LIMS3-201ENST00000437679 ZMAT5Q9UDW3 170 aaKnown RBP11.78□□□□□ -0.52
LIMS3-201ENST00000437679 ADAM30Q9UKF2 790 aa11.78□□□□□ -0.52
LIMS3-201ENST00000437679 C13orf42A0A1B0GVH6 325 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 SEC14L6B5MCN3 397 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 LINC01619G3V211 115 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 IGHV3-11P01762 117 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 RCVRNP35243 200 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 HRH1P35367 487 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 BRWD1-AS2P59051 145 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 EGFEM1PQ0D2K5 195 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 C9orf66Q5T8R8 295 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 ASPHD1Q5U4P2 390 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 AADACL3Q5VUY0 350 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 LYSMD2Q8IV50 215 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 VKORC1L1Q8N0U8 176 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 RAB2BQ8WUD1 216 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 MOB3AQ96BX8 217 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 RHOVQ96L33 236 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 SPIN2AQ99865 258 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 SPIN2BQ9BPZ2 258 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 ALX4Q9H161 411 aaPredicted RBP11.77□□□□□ -0.53
LIMS3-201ENST00000437679 COA4Q9NYJ1 87 aa11.77□□□□□ -0.53
LIMS3-201ENST00000437679 A0A0G2JLM5 398 aa11.76□□□□□ -0.53
LIMS3-201ENST00000437679 RBFOX2O43251 390 aaKnown RBP eCLIP11.76□□□□□ -0.53
LIMS3-201ENST00000437679 NOL3O60936 208 aaKnown RBP11.76□□□□□ -0.53
LIMS3-201ENST00000437679 KBTBD11O94819 623 aa11.76□□□□□ -0.53
LIMS3-201ENST00000437679 HSPB1P04792 205 aaKnown RBP11.76□□□□□ -0.53
LIMS3-201ENST00000437679 APELAP0DMC3 54 aa11.76□□□□□ -0.53
LIMS3-201ENST00000437679 GNRHRP30968 328 aa11.76□□□□□ -0.53
LIMS3-201ENST00000437679 RPL5P46777 297 aaKnown RBP11.76□□□□□ -0.53
LIMS3-201ENST00000437679 KRTAP10-11P60412 298 aa11.76□□□□□ -0.53
LIMS3-201ENST00000437679 TSPAN5P62079 268 aa11.76□□□□□ -0.53
LIMS3-201ENST00000437679 SPCS2Q15005 226 aa11.76□□□□□ -0.53
LIMS3-201ENST00000437679 PUSL1Q8N0Z8 303 aaKnown RBP11.76□□□□□ -0.53
LIMS3-201ENST00000437679 OR51H1Q8NH63 302 aa11.76□□□□□ -0.53
LIMS3-201ENST00000437679 TMEM167AQ8TBQ9 72 aa11.76□□□□□ -0.53
LIMS3-201ENST00000437679 CD300LFQ8TDQ1 290 aa11.76□□□□□ -0.53
LIMS3-201ENST00000437679 BCL7BQ9BQE9 202 aa11.76□□□□□ -0.53
LIMS3-201ENST00000437679 TINAGL1Q9GZM7 467 aaPredicted RBP11.76□□□□□ -0.53
LIMS3-201ENST00000437679 DNAH3Q8TD57 4116 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms