RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 DLEU1O43261 78 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 HBDP02042 147 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 CTAG1AP78358 180 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 RAE1P78406 368 aaKnown RBP6.22□□□□□ -1.41
VPS53-204ENST00000437048 EBLN2Q6P2I7 272 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 TMEM186Q96B77 213 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 TM4SF19Q96DZ7 209 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 MISP3Q96FF7 219 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 TM2D1Q9BX74 207 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 H3BQ85 93 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 WISP3O95389 354 aaPredicted RBP6.22□□□□□ -1.41
VPS53-204ENST00000437048 CCL14Q16627 93 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 COL24A1Q17RW2 1714 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 A0A1B0GTI1 187 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 FAM231BA6NCW3 169 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 ZNF32P17041 273 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 FGF8P55075 233 aaPredicted RBP6.22□□□□□ -1.41
VPS53-204ENST00000437048 OR52E5Q8NH55 327 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 RAMP1O60894 148 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 CEACAM1P13688 526 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 CLDND2Q8NHS1 167 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 TBC1D29Q9UFV1 150 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 COX11Q9Y6N1 276 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 UMODP07911 640 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 FCGR2BP31994 310 aaPredicted RBP6.22□□□□□ -1.41
VPS53-204ENST00000437048 FOXF1Q12946 379 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 MBD1Q9UIS9 605 aaPredicted RBP6.22□□□□□ -1.41
VPS53-204ENST00000437048 LY75O60449 1722 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 OR1K1Q8NGR3 316 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 DLX4Q92988 240 aaPredicted RBP6.22□□□□□ -1.41
VPS53-204ENST00000437048 C20orf144Q9BQM9 153 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 HCSTQ9UBK5 93 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 KLHDC9Q8NEP7 349 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 OR2H1Q9GZK4 316 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 TNFRSF19Q9NS68 423 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 DYSFO75923 2080 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 ZXDCQ2QGD7 858 aaPredicted RBP6.22□□□□□ -1.41
VPS53-204ENST00000437048 LYZL2Q7Z4W2 148 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 MOB3BQ86TA1 216 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 SDF2L1Q9HCN8 221 aa6.22□□□□□ -1.41
VPS53-204ENST00000437048 PLXNA1Q9UIW2 1896 aa6.21□□□□□ -1.41
VPS53-204ENST00000437048 MARCH11A6NNE9 402 aa6.21□□□□□ -1.41
VPS53-204ENST00000437048 MLF2Q15773 248 aaPredicted RBP6.21□□□□□ -1.41
VPS53-204ENST00000437048 FAM57AQ8TBR7 257 aa6.21□□□□□ -1.41
VPS53-204ENST00000437048 PAAF1Q9BRP4 392 aa6.21□□□□□ -1.41
VPS53-204ENST00000437048 HEPN1Q6WQI6 88 aa6.21□□□□□ -1.41
VPS53-204ENST00000437048 TDHQ8IZJ6 230 aa6.21□□□□□ -1.41
VPS53-204ENST00000437048 THOC3Q96J01 351 aaKnown RBP6.21□□□□□ -1.41
VPS53-204ENST00000437048 SPTY2D1-AS1A0A0U1RR47 76 aa6.21□□□□□ -1.41
VPS53-204ENST00000437048 GZMMP51124 257 aa6.21□□□□□ -1.41
VPS53-204ENST00000437048 TNFAIP6P98066 277 aaPredicted RBP6.21□□□□□ -1.41
VPS53-204ENST00000437048 SPATA31B1PQ5VZV4 182 aa6.21□□□□□ -1.41
VPS53-204ENST00000437048 KCNE3Q9Y6H6 103 aa6.21□□□□□ -1.41
VPS53-204ENST00000437048 ZNF831Q5JPB2 1677 aa6.21□□□□□ -1.41
VPS53-204ENST00000437048 hCG_38984A0A1B0GV85 526 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 H2BFSP57053 126 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 KIR3DL3Q8N743 410 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 OR8B2Q96RD0 313 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 LAMTOR3Q9UHA4 124 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 INSIG2Q9Y5U4 225 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 CXCL13O43927 109 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 ZNF205O95201 554 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 EMDP50402 254 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 LHX8Q68G74 356 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 SONP18583 2426 aaKnown RBP6.21□□□□□ -1.42
VPS53-204ENST00000437048 CEACAM5P06731 702 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 RHOVQ96L33 236 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 DOCK5Q9H7D0 1870 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 CDC42EP2O14613 210 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 HIST1H2BKO60814 126 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 DPM2O94777 84 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 HIST1H2BJP06899 126 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 VSIG10L2P0DP72 767 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 HIST1H2BOP23527 126 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 HIST1H2BBP33778 126 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 HIST1H2BDP58876 126 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 HIST1H2BCP62807 126 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 KLRB1Q12918 225 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 HIST2H2BEQ16778 126 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.21□□□□□ -1.42
VPS53-204ENST00000437048 HIST1H2BHQ93079 126 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 TIMP4Q99727 224 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 HIST1H2BNQ99877 126 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 HIST1H2BMQ99879 126 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 SIPA1L1O43166 1804 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 PGFP49763 221 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 PLSCR4Q9NRQ2 329 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 CD5LO43866 347 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 C1QAP02745 245 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 SRP19P09132 144 aaKnown RBP6.21□□□□□ -1.42
VPS53-204ENST00000437048 RPL27AP46776 148 aaKnown RBP6.21□□□□□ -1.42
VPS53-204ENST00000437048 MMDQ15546 238 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 OR4D11Q8NGI4 311 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 RCC1LQ96I51 464 aaKnown RBP6.21□□□□□ -1.42
VPS53-204ENST00000437048 IL36RNQ9UBH0 155 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 TSC2P49815 1807 aa6.21□□□□□ -1.42
VPS53-204ENST00000437048 SNRPD3P62318 126 aaKnown RBP6.2□□□□□ -1.42
VPS53-204ENST00000437048 SSBP2P81877 361 aaPredicted RBP6.2□□□□□ -1.42
VPS53-204ENST00000437048 RNF182Q8N6D2 247 aa6.2□□□□□ -1.42
VPS53-204ENST00000437048 K7EMI3 77 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 131.1 ms