RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 PP632Q6XCG6 107 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 WDR86Q86TI4 376 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 AMN1Q8IY45 258 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 UMODL1-AS1Q8N2C9 162 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 FAM24BQ8N5W8 94 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 GRPEL2Q8TAA5 225 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 CIRBP-AS1Q8TBR5 109 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 ITLN2Q8WWU7 325 aaPredicted RBP3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 PYURFQ96I23 114 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 TSPAN32Q96QS1 320 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 C1QTNF6Q9BXI9 259 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 MAP1LC3BQ9GZQ8 125 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 ACER3Q9NUN7 267 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 ERGIC3Q9Y282 383 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 LRP4O75096 1905 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 SLIT3O75094 1523 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 E7EQ34 232 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 IGHV1-46P01743 117 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 OR5AC1P0C628 307 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 CD28P10747 220 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 PPIBP23284 216 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 TAS2R45P59539 299 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 FLI1Q01543 452 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 APOFQ13790 326 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 C12orf74Q32Q52 190 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 SAMD13Q5VXD3 122 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 PRSS54Q6PEW0 395 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 TOMM20LQ6UXN7 152 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 C1orf174Q8IYL3 243 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 MALSU1Q96EH3 234 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 ZNF286AQ9HBT8 521 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 SPANXCQ9NY87 97 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 MRPS16Q9Y3D3 137 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 RFNGQ9Y644 331 aa3.23□□□□□ -1.89
CCDC88A-206ENST00000430086 PTPRTO14522 1441 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 MYO5BQ9ULV0 1848 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 A0A1B0GW54 56 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 M0QZK8 103 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 SLC17A3O00476 420 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 COX7A2LO14548 114 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 MFSD11O43934 449 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 PDYNP01213 254 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 C1QBP02746 253 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 ZNF823P16415 610 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 CRABP1P29762 137 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 NCALDP61601 193 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 GNG5P63218 68 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 ELF3P78545 371 aaPredicted RBP3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 TNFAIP6P98066 277 aaPredicted RBP3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 DEFA6Q01524 100 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 ENDOGQ14249 297 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 CST6Q15828 149 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 SCGB2B2Q4G0G5 96 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 TMEM128Q5BJH2 165 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 TMEM78Q5T7P6 136 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 Q6ZS49 121 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 SCXQ7RTU7 201 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 DHFR2Q86XF0 187 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 ZNF615Q8N8J6 731 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 GPR119Q8TDV5 335 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 RAB2BQ8WUD1 216 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 KLK6Q92876 244 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 MAL2Q969L2 176 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 RBMXL1Q96E39 390 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 L3HYPDHQ96EM0 354 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 C1orf50Q9BV19 199 aa3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 NKX6-2Q9C056 277 aaPredicted RBP3.22□□□□□ -1.89
CCDC88A-206ENST00000430086 MIA2Q96PC5 1412 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 IGSF23A1L1A6 192 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 PRORSD1PA6NEY8 169 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 APOA2P02652 100 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 OR10J4P0C629 311 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 CPMP14384 443 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 DAPP51397 102 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 DEFA1P59665 94 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 KRTAP10-10P60014 251 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 TPI1P60174 286 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 RPS20P60866 119 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 SGPP2Q8IWX5 399 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 ZNF561Q8N587 486 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 EIF4E3Q8N5X7 224 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 C11orf40Q8WZ69 217 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 TCEAL4Q96EI5 215 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 FAM60AQ9NP50 221 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 COQ4Q9Y3A0 265 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 TRAPPC1Q9Y5R8 145 aa3.21□□□□□ -1.9
CCDC88A-206ENST00000430086 THSD7AQ9UPZ6 1657 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 TRBV20OR9-2A0A075B6H5 130 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 A0A1W2PQ67 120 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 ARL5CA6NH57 179 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 IGLL5B9A064 214 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 KPNA4O00629 521 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 ZNF682O95780 498 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 IFNA7P01567 189 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 PPBPP02775 128 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 ADRA2AP08913 450 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 LGALS1P09382 135 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 ZNF705DP0CH99 300 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 MPV17P39210 176 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 ZNF140P52738 457 aaPredicted RBP3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms