RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 TCF19Q9Y242 345 aa13.14□□□□□ -0.31
PTPRF-206ENST00000429895 TGIF2-C20orf24A0A0A6YYL0 155 aa13.14□□□□□ -0.31
PTPRF-206ENST00000429895 MRPL13Q9BYD1 178 aaKnown RBP13.14□□□□□ -0.31
PTPRF-206ENST00000429895 GPR132Q9UNW8 380 aa13.14□□□□□ -0.31
PTPRF-206ENST00000429895 OR4D5Q8NGN0 318 aa13.13□□□□□ -0.31
PTPRF-206ENST00000429895 LNP1A1A4G5 178 aa13.13□□□□□ -0.31
PTPRF-206ENST00000429895 LINC00305Q7Z4B0 112 aa13.13□□□□□ -0.31
PTPRF-206ENST00000429895 HLA-DQB1P01920 261 aa13.13□□□□□ -0.31
PTPRF-206ENST00000429895 PRB3Q04118 309 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-206ENST00000429895 DUX3Q96PT4 197 aa13.13□□□□□ -0.31
PTPRF-206ENST00000429895 COL25A1Q9BXS0 654 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-206ENST00000429895 TRBV20OR9-2A0A075B6H5 130 aa13.13□□□□□ -0.31
PTPRF-206ENST00000429895 NPIPB8E9PQR5 432 aa13.13□□□□□ -0.31
PTPRF-206ENST00000429895 IGKV1D-33P01593 117 aa13.13□□□□□ -0.31
PTPRF-206ENST00000429895 IGKV1-33P01594 117 aa13.13□□□□□ -0.31
PTPRF-206ENST00000429895 RFPL3SP0C7P2 107 aa13.13□□□□□ -0.31
PTPRF-206ENST00000429895 HOXB1P14653 301 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-206ENST00000429895 KIR2DL4Q99706 377 aa13.13□□□□□ -0.31
PTPRF-206ENST00000429895 TRGC1P0CF51 173 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FABP2P12104 132 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 DMRTA2Q96SC8 542 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 DNAJC13O75165 2243 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 BCORQ6W2J9 1755 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 AQP3Q92482 292 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 SCARF2Q96GP6 870 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-206ENST00000429895 TMEM101Q96IK0 257 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FBXL15Q9H469 300 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 MUC21A0A0G2JKD1 596 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 MUC21A0A140T8X8 626 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 MUC21Q5SSG8 566 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 LINC00469Q8N7U9 141 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 WFIKKN1Q96NZ8 548 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 SRIP30626 198 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM168AQ92567 244 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 TMEM106BQ9NUM4 274 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 ADAMTSL1Q8N6G6 1762 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A10PA6NDY2 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A18PA6NE21 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A16PA6NEW6 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 GAGE10A6NGK3 116 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A20PA6NIJ5 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A8PA6NJQ4 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A7PA6NKC0 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A22PA8MWA6 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A12PA8MX19 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A5PA8MXJ8 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A23PA8MXZ1 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A15PP0C7V4 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A13PP0C7W8 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A14PP0C7W9 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 FAM90A24PP0C7X0 464 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 PTGDSP41222 190 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 NABP2Q9BQ15 211 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 RP1L1Q8IWN7 2480 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-206ENST00000429895 MCM3APO60318 1980 aa13.12□□□□□ -0.31
PTPRF-206ENST00000429895 M0R381 172 aa13.11□□□□□ -0.31
PTPRF-206ENST00000429895 NUTF2P61970 127 aaKnown RBP13.11□□□□□ -0.31
PTPRF-206ENST00000429895 BSPH1Q075Z2 132 aa13.11□□□□□ -0.31
PTPRF-206ENST00000429895 NRIP2Q9BQI9 281 aa13.11□□□□□ -0.31
PTPRF-206ENST00000429895 H0YL77 283 aa13.11□□□□□ -0.31
PTPRF-206ENST00000429895 RRHO14718 337 aa13.11□□□□□ -0.31
PTPRF-206ENST00000429895 DNASE2BQ8WZ79 361 aa13.11□□□□□ -0.31
PTPRF-206ENST00000429895 REPIN1Q9BWE0 567 aaKnown RBP13.11□□□□□ -0.31
PTPRF-206ENST00000429895 KCNE5Q9UJ90 142 aa13.11□□□□□ -0.31
PTPRF-206ENST00000429895 ATOH7Q8N100 152 aa13.11□□□□□ -0.31
PTPRF-206ENST00000429895 FOXA2Q9Y261 457 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-206ENST00000429895 SHANK3Q9BYB0 1731 aa13.11□□□□□ -0.31
PTPRF-206ENST00000429895 MT-ND6P03923 174 aa13.11□□□□□ -0.31
PTPRF-206ENST00000429895 ZNF146Q15072 292 aa13.11□□□□□ -0.31
PTPRF-206ENST00000429895 DRAM1Q8N682 238 aa13.11□□□□□ -0.31
PTPRF-206ENST00000429895 ABHD17AQ96GS6 310 aa13.11□□□□□ -0.31
PTPRF-206ENST00000429895 TGFAP01135 160 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 ICAM4Q14773 271 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 COL5A1-AS1Q5SY13 56 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 PPP1R32Q7Z5V6 425 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 OR5P3Q8WZ94 311 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 TNFRSF18Q9Y5U5 241 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 HLA-DQA1P01909 254 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 CD1AP06126 327 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 SMIM6P0DI80 62 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 ERGP11308 486 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 CDKN1AP38936 164 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 TMEM54Q969K7 222 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 LINC00470Q9BZP3 86 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 PROB1E7EW31 1015 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 KLF4O43474 513 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 TNFSF10P50591 281 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 FOXC2Q99958 501 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 C7orf69Q9H7B7 122 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 G6PC2Q9NQR9 355 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 MRPS16Q9Y3D3 137 aaKnown RBP13.1□□□□□ -0.31
PTPRF-206ENST00000429895 ARAP2Q8WZ64 1704 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 TCF24Q7RTU0 167 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 OR10S1Q8NGN2 331 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 ALX4Q9H161 411 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-206ENST00000429895 FBXL7Q9UJT9 491 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 IGHV3-11P01762 117 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 SPSB4Q96A44 273 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 Q96M66 194 aa13.1□□□□□ -0.31
PTPRF-206ENST00000429895 ABCA3Q99758 1704 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms