RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 PDLIM3Q53GG5 364 aaPredicted RBP16.53■□□□□ 0.24
USP39-204ENST00000409766 CENPVQ7Z7K6 275 aaPredicted RBP16.53■□□□□ 0.24
USP39-204ENST00000409766 ZNF383Q8NA42 475 aa16.53■□□□□ 0.24
USP39-204ENST00000409766 OR52E5Q8NH55 327 aa16.53■□□□□ 0.24
USP39-204ENST00000409766 RBMXL1Q96E39 390 aaKnown RBP16.53■□□□□ 0.24
USP39-204ENST00000409766 TMEM147Q9BVK8 224 aa16.53■□□□□ 0.24
USP39-204ENST00000409766 SPCS3P61009 180 aa16.53■□□□□ 0.24
USP39-204ENST00000409766 GNB2P62879 340 aa16.53■□□□□ 0.24
USP39-204ENST00000409766 EFNB3Q15768 340 aa16.53■□□□□ 0.24
USP39-204ENST00000409766 ADTRPQ96IZ2 230 aa16.53■□□□□ 0.24
USP39-204ENST00000409766 TMEM140Q9NV12 185 aa16.53■□□□□ 0.24
USP39-204ENST00000409766 TIMM9Q9Y5J7 89 aa16.53■□□□□ 0.24
USP39-204ENST00000409766 TET2Q6N021 2002 aaPredicted RBP16.52■□□□□ 0.24
USP39-204ENST00000409766 CCL21O00585 134 aa16.52■□□□□ 0.24
USP39-204ENST00000409766 LY86O95711 162 aa16.52■□□□□ 0.24
USP39-204ENST00000409766 CHRNB4P30926 498 aa16.52■□□□□ 0.24
USP39-204ENST00000409766 RAB2AP61019 212 aa16.52■□□□□ 0.24
USP39-204ENST00000409766 ZNF726P1Q15940 193 aa16.52■□□□□ 0.24
USP39-204ENST00000409766 OR10A7Q8NGE5 316 aa16.52■□□□□ 0.24
USP39-204ENST00000409766 GAL3ST2Q9H3Q3 398 aa16.52■□□□□ 0.24
USP39-204ENST00000409766 PIEZO1Q92508 2521 aa16.52■□□□□ 0.24
USP39-204ENST00000409766 TRAV3A0A0B4J244 114 aa16.52■□□□□ 0.23
USP39-204ENST00000409766 FAM90A27PA6NNH2 459 aa16.52■□□□□ 0.23
USP39-204ENST00000409766 C15orf62A8K5M9 175 aa16.52■□□□□ 0.23
USP39-204ENST00000409766 ERVFRD-1P60508 538 aa16.52■□□□□ 0.23
USP39-204ENST00000409766 VWC2Q2TAL6 325 aa16.52■□□□□ 0.23
USP39-204ENST00000409766 CLDND2Q8NHS1 167 aa16.52■□□□□ 0.23
USP39-204ENST00000409766 LINC01560Q8TB33 94 aa16.52■□□□□ 0.23
USP39-204ENST00000409766 MBD3L1Q8WWY6 194 aa16.52■□□□□ 0.23
USP39-204ENST00000409766 ZCCHC14Q8WYQ9 949 aaKnown RBP16.52■□□□□ 0.23
USP39-204ENST00000409766 NDRG3Q9UGV2 375 aa16.52■□□□□ 0.23
USP39-204ENST00000409766 ARG1P05089 322 aa16.51■□□□□ 0.23
USP39-204ENST00000409766 OR13C7P0DN81 318 aa16.51■□□□□ 0.23
USP39-204ENST00000409766 RPS16P62249 146 aaKnown RBP16.51■□□□□ 0.23
USP39-204ENST00000409766 HAGHQ16775 308 aa16.51■□□□□ 0.23
USP39-204ENST00000409766 TMEM41BQ5BJD5 291 aa16.51■□□□□ 0.23
USP39-204ENST00000409766 TMEM200BQ69YZ2 307 aa16.51■□□□□ 0.23
USP39-204ENST00000409766 LYPD2Q6UXB3 125 aa16.51■□□□□ 0.23
USP39-204ENST00000409766 RELNP78509 3460 aa16.51■□□□□ 0.23
USP39-204ENST00000409766 B9A039 149 aa16.5■□□□□ 0.23
USP39-204ENST00000409766 PLAUP00749 431 aa16.5■□□□□ 0.23
USP39-204ENST00000409766 GRNP28799 593 aaKnown RBP16.5■□□□□ 0.23
USP39-204ENST00000409766 ICAM4Q14773 271 aa16.5■□□□□ 0.23
USP39-204ENST00000409766 ZNF506Q5JVG8 444 aa16.5■□□□□ 0.23
USP39-204ENST00000409766 HEPN1Q6WQI6 88 aa16.5■□□□□ 0.23
USP39-204ENST00000409766 ZNF429Q86V71 674 aa16.5■□□□□ 0.23
USP39-204ENST00000409766 RCC1LQ96I51 464 aaKnown RBP16.5■□□□□ 0.23
USP39-204ENST00000409766 RHOVQ96L33 236 aa16.5■□□□□ 0.23
USP39-204ENST00000409766 AIFM2Q9BRQ8 373 aa16.5■□□□□ 0.23
USP39-204ENST00000409766 VDAC2P45880 294 aaPredicted RBP16.5■□□□□ 0.23
USP39-204ENST00000409766 SSX7Q7RTT5 188 aa16.5■□□□□ 0.23
USP39-204ENST00000409766 ZNF714Q96N38 554 aa16.5■□□□□ 0.23
USP39-204ENST00000409766 ZNRD1Q9P1U0 126 aa16.5■□□□□ 0.23
USP39-204ENST00000409766 SCAF4O95104 1147 aaKnown RBP16.49■□□□□ 0.23
USP39-204ENST00000409766 DAOP14920 347 aa16.49■□□□□ 0.23
USP39-204ENST00000409766 CCL3L1P16619 93 aa16.49■□□□□ 0.23
USP39-204ENST00000409766 MDKP21741 143 aaPredicted RBP16.49■□□□□ 0.23
USP39-204ENST00000409766 ETV3LQ6ZN32 361 aa16.49■□□□□ 0.23
USP39-204ENST00000409766 CTSZQ9UBR2 303 aa16.49■□□□□ 0.23
USP39-204ENST00000409766 NCOR2Q9Y618 2525 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 NDUFB3O43676 98 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 SRP19P09132 144 aaKnown RBP16.48■□□□□ 0.23
USP39-204ENST00000409766 CT45A6P0DMU7 189 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 CT45A5P0DMU8 189 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 CT45A7P0DMV0 189 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 ELLP55199 621 aaPredicted RBP16.48■□□□□ 0.23
USP39-204ENST00000409766 LRRC10Q5BKY1 277 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 SOHLH1Q5JUK2 328 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 OR4A47Q6IF82 309 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 CISD1Q9NZ45 108 aaKnown RBP16.48■□□□□ 0.23
USP39-204ENST00000409766 KAAG1Q9UBP8 84 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 IGHV1-69-2A0A0G2JMI3 117 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 C15orf61A6NNL5 157 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 SIAH2O43255 324 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 HSPB1P04792 205 aaKnown RBP16.48■□□□□ 0.23
USP39-204ENST00000409766 FGF7P21781 194 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 POU2AF1Q16633 256 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 HFEQ30201 348 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 AWAT1Q58HT5 328 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 LCN15Q6UWW0 184 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 ATRXP46100 2492 aa16.48■□□□□ 0.23
USP39-204ENST00000409766 IGKV1D-33P01593 117 aa16.47■□□□□ 0.23
USP39-204ENST00000409766 IGKV1-33P01594 117 aa16.47■□□□□ 0.23
USP39-204ENST00000409766 RPP30P78346 268 aaKnown RBP16.47■□□□□ 0.23
USP39-204ENST00000409766 ADORA2A-AS1P86434 159 aa16.47■□□□□ 0.23
USP39-204ENST00000409766 TFF3Q07654 80 aa16.47■□□□□ 0.23
USP39-204ENST00000409766 HNF4GQ14541 408 aa16.47■□□□□ 0.23
USP39-204ENST00000409766 KHDC3LQ587J8 217 aa16.47■□□□□ 0.23
USP39-204ENST00000409766 ZNF787Q6DD87 383 aa16.47■□□□□ 0.23
USP39-204ENST00000409766 ACSM6Q6P461 480 aa16.47■□□□□ 0.23
USP39-204ENST00000409766 RPP25LQ8N5L8 163 aaKnown RBP16.47■□□□□ 0.23
USP39-204ENST00000409766 CLCC1Q96S66 551 aa16.47■□□□□ 0.23
USP39-204ENST00000409766 HEYLQ9NQ87 328 aaPredicted RBP16.47■□□□□ 0.23
USP39-204ENST00000409766 TMEM14BQ9NUH8 114 aa16.47■□□□□ 0.23
USP39-204ENST00000409766 TCF19Q9Y242 345 aa16.47■□□□□ 0.23
USP39-204ENST00000409766 DVL1O14640 695 aa16.46■□□□□ 0.23
USP39-204ENST00000409766 HRASP01112 189 aa16.46■□□□□ 0.23
USP39-204ENST00000409766 CDSNQ15517 529 aa16.46■□□□□ 0.23
USP39-204ENST00000409766 ZNF833PQ6ZTB9 187 aa16.46■□□□□ 0.23
USP39-204ENST00000409766 RXFP4Q8TDU9 374 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms