RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ZNF708P17019 499 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 ACSF3Q4G176 576 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-203ENST00000409050 SPINK9Q5DT21 86 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 LINC01590Q5TEZ4 76 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 SPINK14Q6IE38 97 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 FAM159AQ6UWV7 190 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 C1QL4Q86Z23 238 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 OR4D5Q8NGN0 318 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 TMEM170AQ8WVE7 144 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 FSCN3Q9NQT6 498 aa5.22□□□□□ -1.57
SCN1A-203ENST00000409050 LINC01565O15544 149 aa5.21□□□□□ -1.57
SCN1A-203ENST00000409050 TIMM23BQ5SRD1 257 aa5.21□□□□□ -1.57
SCN1A-203ENST00000409050 UNQ5815/PRO19632Q6UWF5 114 aa5.21□□□□□ -1.57
SCN1A-203ENST00000409050 SRSF12Q8WXF0 261 aaKnown RBP5.21□□□□□ -1.57
SCN1A-203ENST00000409050 ZNF385AQ96PM9 386 aaKnown RBP5.21□□□□□ -1.57
SCN1A-203ENST00000409050 RPP21Q9H633 154 aaKnown RBP5.21□□□□□ -1.57
SCN1A-203ENST00000409050 KLHDC2Q9Y2U9 406 aa5.21□□□□□ -1.57
SCN1A-203ENST00000409050 CLDN16Q9Y5I7 305 aa5.21□□□□□ -1.57
SCN1A-203ENST00000409050 LHFPL6Q9Y693 200 aa5.21□□□□□ -1.57
SCN1A-203ENST00000409050 SIRT4Q9Y6E7 314 aaPredicted RBP5.21□□□□□ -1.57
SCN1A-203ENST00000409050 LTBP4Q8N2S1 1624 aa5.21□□□□□ -1.57
SCN1A-203ENST00000409050 NUMA1Q14980 2115 aa5.21□□□□□ -1.57
SCN1A-203ENST00000409050 DUSP14O95147 198 aaKnown RBP5.21□□□□□ -1.58
SCN1A-203ENST00000409050 SRP19P09132 144 aaKnown RBP5.21□□□□□ -1.58
SCN1A-203ENST00000409050 ZNF137PP52743 207 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 ARF6P62330 175 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 MIC13Q5XKP0 118 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 OR9G4Q8NGQ1 327 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 OR52E5Q8NH55 327 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 ZNF703Q9H7S9 590 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-203ENST00000409050 RNF115Q9Y4L5 304 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 TRAV1-1A0A0B4J248 108 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 ECSCRQ19T08 205 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 MEIG1Q5JSS6 88 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 ZNF488Q96MN9 340 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 NDUFAF3Q9BU61 184 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 SDF2L1Q9HCN8 221 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 SLX4Q8IY92 1834 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 UPK2O00526 184 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 MYOD1P15172 320 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 LEPP41159 167 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 CCL20P78556 96 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 UNC119Q13432 240 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 ORMDL2Q53FV1 153 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 TMEM144Q7Z5S9 345 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 ORMDL3Q8N138 153 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 SMRP1Q8NCR6 262 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 BEND2Q8NDZ0 799 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 DNASE2BQ8WZ79 361 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 RNF5Q99942 180 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 NPCDR1Q9BY65 106 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 A0A1W2PP11 408 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 F8VVB4 439 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 F8VWA3 439 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 ERVH48-1M5A8F1 160 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 EIF3GO75821 320 aaKnown RBP eCLIP5.21□□□□□ -1.58
SCN1A-203ENST00000409050 GPX1P07203 203 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 RUNX1Q01196 453 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 MGAT2Q10469 447 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 CXorf66Q5JRM2 361 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-203ENST00000409050 ZAR1Q86SH2 424 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 DEFB124Q8NES8 71 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 UCN2Q96RP3 112 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 ST20Q9HBF5 79 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 FOXJ2Q9P0K8 574 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 R4GN57 208 aa5.21□□□□□ -1.58
SCN1A-203ENST00000409050 COL18A1P39060 1754 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 F2Z2F3 143 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 PEX7O00628 323 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 IGKV1D-16P01601 117 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 PATE4P0C8F1 98 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 TMPRSS3P57727 454 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 Q6ZT83 130 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 PLPPR1Q8TBJ4 325 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 FGF11Q92914 225 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 CBLN4Q9NTU7 201 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 TMEM74BQ9NUR3 256 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 A0A1B0GTI1 187 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 HYAL3O43820 417 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-203ENST00000409050 MOSPD3O75425 235 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 IL6RP08887 468 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-203ENST00000409050 SCTP09683 121 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 C3AR1Q16581 482 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 CENPWQ5EE01 88 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 FAM71F2Q6NXP2 309 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 ARL6IP6Q8N6S5 226 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 RCC1LQ96I51 464 aaKnown RBP5.2□□□□□ -1.58
SCN1A-203ENST00000409050 GNB1LQ9BYB4 327 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 PPIAL4CA0A0B4J2A2 164 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 FAM157AC9JC47 383 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 H0YL77 283 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 PIN1P1O15428 100 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 IGHV4-34P06331 123 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 PPIAL4GP0DN37 164 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 CCL2P13500 99 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 CCL1P22362 96 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 EMP1P54849 157 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 DRAM1Q8N682 238 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 ZPLD1Q8TCW7 415 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 PGLYRP4Q96LB8 373 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms