RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 IL22RA2Q969J5 263 aa14.49□□□□□ -0.09
SDC1-203ENST00000403076 RRNAD1Q96FB5 475 aaKnown RBP14.49□□□□□ -0.09
SDC1-203ENST00000403076 RITA1Q96K30 269 aa14.49□□□□□ -0.09
SDC1-203ENST00000403076 ZNF48Q96MX3 618 aaPredicted RBP14.49□□□□□ -0.09
SDC1-203ENST00000403076 TSNAXQ99598 290 aaKnown RBP14.49□□□□□ -0.09
SDC1-203ENST00000403076 RNF5Q99942 180 aa14.49□□□□□ -0.09
SDC1-203ENST00000403076 SHPKQ9UHJ6 478 aa14.49□□□□□ -0.09
SDC1-203ENST00000403076 CELSR1Q9NYQ6 3014 aa14.48□□□□□ -0.09
SDC1-203ENST00000403076 HOXB5P09067 269 aa14.48□□□□□ -0.09
SDC1-203ENST00000403076 G6PCP35575 357 aa14.48□□□□□ -0.09
SDC1-203ENST00000403076 EBI3Q14213 229 aa14.48□□□□□ -0.09
SDC1-203ENST00000403076 Q6YL49 198 aa14.48□□□□□ -0.09
SDC1-203ENST00000403076 LYZL2Q7Z4W2 148 aa14.48□□□□□ -0.09
SDC1-203ENST00000403076 VKORC1L1Q8N0U8 176 aa14.48□□□□□ -0.09
SDC1-203ENST00000403076 SLC35G3Q8N808 338 aa14.48□□□□□ -0.09
SDC1-203ENST00000403076 LRTM2Q8N967 370 aa14.48□□□□□ -0.09
SDC1-203ENST00000403076 RHOVQ96L33 236 aa14.48□□□□□ -0.09
SDC1-203ENST00000403076 MED28Q9H204 178 aa14.48□□□□□ -0.09
SDC1-203ENST00000403076 TNFRSF19Q9NS68 423 aa14.48□□□□□ -0.09
SDC1-203ENST00000403076 hCG_2014768A0A024R1R8 64 aa14.47□□□□□ -0.09
SDC1-203ENST00000403076 MARCH11A6NNE9 402 aa14.47□□□□□ -0.09
SDC1-203ENST00000403076 NCBP2LA6PVI3 153 aaKnown RBP14.47□□□□□ -0.09
SDC1-203ENST00000403076 IFNA21P01568 189 aa14.47□□□□□ -0.09
SDC1-203ENST00000403076 IGHV4-59P01825 116 aa14.47□□□□□ -0.09
SDC1-203ENST00000403076 MMDQ15546 238 aa14.47□□□□□ -0.09
SDC1-203ENST00000403076 VMA21Q3ZAQ7 101 aa14.47□□□□□ -0.09
SDC1-203ENST00000403076 PIFOQ8TCI5 191 aa14.47□□□□□ -0.09
SDC1-203ENST00000403076 SEC22AQ96IW7 307 aa14.47□□□□□ -0.09
SDC1-203ENST00000403076 SRRM4A7MD48 611 aaKnown RBP14.46□□□□□ -0.09
SDC1-203ENST00000403076 CNTFRP26992 372 aa14.46□□□□□ -0.09
SDC1-203ENST00000403076 IER3P46695 156 aa14.46□□□□□ -0.09
SDC1-203ENST00000403076 PLGLAQ15195 96 aa14.46□□□□□ -0.09
SDC1-203ENST00000403076 H2BFWTQ7Z2G1 175 aa14.46□□□□□ -0.09
SDC1-203ENST00000403076 OR5R1Q8NH85 324 aa14.46□□□□□ -0.09
SDC1-203ENST00000403076 SSMEM1Q8WWF3 244 aa14.46□□□□□ -0.09
SDC1-203ENST00000403076 PRDM13Q9H4Q3 707 aa14.46□□□□□ -0.09
SDC1-203ENST00000403076 KIAA1456Q9P272 454 aa14.46□□□□□ -0.09
SDC1-203ENST00000403076 PITPNC1Q9UKF7 332 aa14.46□□□□□ -0.09
SDC1-203ENST00000403076 DUXBA0A1W2PPF3 345 aa14.46□□□□□ -0.1
SDC1-203ENST00000403076 FAM25EA8MYX2 175 aa14.46□□□□□ -0.1
SDC1-203ENST00000403076 NBR2O15453 112 aa14.46□□□□□ -0.1
SDC1-203ENST00000403076 HOXA3O43365 443 aaPredicted RBP14.46□□□□□ -0.1
SDC1-203ENST00000403076 SLC25A17O43808 307 aa14.46□□□□□ -0.1
SDC1-203ENST00000403076 ADAP1O75689 374 aa14.46□□□□□ -0.1
SDC1-203ENST00000403076 PSG5Q15238 335 aa14.46□□□□□ -0.1
SDC1-203ENST00000403076 FBLN7Q53RD9 439 aa14.46□□□□□ -0.1
SDC1-203ENST00000403076 TMEM219Q86XT9 240 aa14.46□□□□□ -0.1
SDC1-203ENST00000403076 C1RLQ9NZP8 487 aa14.46□□□□□ -0.1
SDC1-203ENST00000403076 TCF19Q9Y242 345 aa14.46□□□□□ -0.1
SDC1-203ENST00000403076 TMED3Q9Y3Q3 217 aa14.46□□□□□ -0.1
SDC1-203ENST00000403076 IGKV1-5P01602 117 aa14.45□□□□□ -0.1
SDC1-203ENST00000403076 SAA1P0DJI8 122 aaPredicted RBP14.45□□□□□ -0.1
SDC1-203ENST00000403076 VDAC1P21796 283 aa14.45□□□□□ -0.1
SDC1-203ENST00000403076 F2RL1P55085 397 aa14.45□□□□□ -0.1
SDC1-203ENST00000403076 GGNBP1Q5YKI7 109 aa14.45□□□□□ -0.1
SDC1-203ENST00000403076 Q8N6K4 173 aa14.45□□□□□ -0.1
SDC1-203ENST00000403076 VSTM2AQ8TAG5 236 aa14.45□□□□□ -0.1
SDC1-203ENST00000403076 SLC25A33Q9BSK2 321 aa14.45□□□□□ -0.1
SDC1-203ENST00000403076 TMEM140Q9NV12 185 aa14.45□□□□□ -0.1
SDC1-203ENST00000403076 METTL1Q9UBP6 276 aaKnown RBP14.45□□□□□ -0.1
SDC1-203ENST00000403076 C13orf42A0A1B0GVH6 325 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 C5orf51A6NDU8 294 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 A6NDX4 124 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 CCSO14618 274 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 GOSR2O14653 212 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 IGLV2-23P01705 113 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 UBE2KP61086 200 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 POU2AF1Q16633 256 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 OR4A47Q6IF82 309 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 FAM219AQ8IW50 185 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 OR8H1Q8NGG4 311 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 ZNF418Q8TF45 676 aaPredicted RBP14.44□□□□□ -0.1
SDC1-203ENST00000403076 LSM10Q969L4 123 aaKnown RBP14.44□□□□□ -0.1
SDC1-203ENST00000403076 RAB18Q9NP72 206 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 MGAT4CQ9UBM8 478 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 MMP24Q9Y5R2 645 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 MTORP42345 2549 aa14.44□□□□□ -0.1
SDC1-203ENST00000403076 A0A1B0GVG6 124 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 DBX1A6NMT0 343 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 RRHO14718 337 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 CRLF1O75462 422 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 RBMXL2O75526 392 aaKnown RBP14.43□□□□□ -0.1
SDC1-203ENST00000403076 SNAPC5O75971 98 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 OR2A4O95047 310 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 SPDEFO95238 335 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 RRAS2P62070 204 aaPredicted RBP14.43□□□□□ -0.1
SDC1-203ENST00000403076 IZUMO4Q1ZYL8 232 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 THOC7Q6I9Y2 204 aaKnown RBP14.43□□□□□ -0.1
SDC1-203ENST00000403076 TEX45Q8NA69 505 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 NPBQ8NG41 125 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 GPR146Q96CH1 333 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 RBM14Q96PK6 669 aaKnown RBP14.43□□□□□ -0.1
SDC1-203ENST00000403076 OR2A7Q96R45 310 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 FBXL15Q9H469 300 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 SVEP1Q4LDE5 3571 aa14.43□□□□□ -0.1
SDC1-203ENST00000403076 A0A0G2JRQ6 117 aa14.42□□□□□ -0.1
SDC1-203ENST00000403076 OR2F2O95006 317 aa14.42□□□□□ -0.1
SDC1-203ENST00000403076 FAM157CP0CG43 387 aa14.42□□□□□ -0.1
SDC1-203ENST00000403076 FCN2Q15485 313 aa14.42□□□□□ -0.1
SDC1-203ENST00000403076 C2orf68Q2NKX9 166 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms