RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 TPPP2P59282 170 aa15.59■□□□□ 0.09
USP48-204ENST00000400301 HSPE1P61604 102 aaKnown RBP15.59■□□□□ 0.09
USP48-204ENST00000400301 TGIF2LYQ8IUE0 185 aa15.59■□□□□ 0.09
USP48-204ENST00000400301 TGIF2LXQ8IUE1 241 aa15.59■□□□□ 0.09
USP48-204ENST00000400301 NPCDR1Q9BY65 106 aa15.59■□□□□ 0.09
USP48-204ENST00000400301 ZNF355PQ9NSJ1 428 aa15.59■□□□□ 0.09
USP48-204ENST00000400301 ORM2P19652 201 aa15.59■□□□□ 0.09
USP48-204ENST00000400301 CDX1P47902 265 aaPredicted RBP15.59■□□□□ 0.09
USP48-204ENST00000400301 PSPNO60542 156 aa15.58■□□□□ 0.09
USP48-204ENST00000400301 KRTDAPP60985 99 aa15.58■□□□□ 0.09
USP48-204ENST00000400301 WDR82Q6UXN9 313 aa15.58■□□□□ 0.09
USP48-204ENST00000400301 OR1L8Q8NGR8 309 aa15.58■□□□□ 0.09
USP48-204ENST00000400301 TIMM9Q9Y5J7 89 aa15.58■□□□□ 0.09
USP48-204ENST00000400301 FREM1Q5H8C1 2179 aa15.58■□□□□ 0.08
USP48-204ENST00000400301 HSBP1L1C9JCN9 74 aa15.58■□□□□ 0.08
USP48-204ENST00000400301 TMEM250H0YL14 139 aa15.58■□□□□ 0.08
USP48-204ENST00000400301 GLRXP35754 106 aa15.58■□□□□ 0.08
USP48-204ENST00000400301 ACSF3Q4G176 576 aaPredicted RBP15.58■□□□□ 0.08
USP48-204ENST00000400301 FAM216AQ8WUB2 273 aa15.58■□□□□ 0.08
USP48-204ENST00000400301 RPEQ96AT9 228 aa15.58■□□□□ 0.08
USP48-204ENST00000400301 MEGF10Q96KG7 1140 aa15.58■□□□□ 0.08
USP48-204ENST00000400301 SPTAN1Q13813 2472 aaKnown RBP15.58■□□□□ 0.08
USP48-204ENST00000400301 HTTP42858 3142 aa15.58■□□□□ 0.08
USP48-204ENST00000400301 FAM90A27PA6NNH2 459 aa15.58■□□□□ 0.08
USP48-204ENST00000400301 Q6ZS49 121 aa15.58■□□□□ 0.08
USP48-204ENST00000400301 MDS2Q8NDY4 140 aa15.58■□□□□ 0.08
USP48-204ENST00000400301 PPIAL4EA0A075B759 164 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 PPIAL4DF5H284 164 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 PPIAL4FP0DN26 164 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 CHRNB4P30926 498 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 Q8WTZ3 238 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 BLNKQ8WV28 456 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 PPIAL4AQ9Y536 164 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 IGKV1-6A0A0C4DH72 117 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 HELTA6NFD8 242 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 OR10J1P30954 320 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 RPEL1Q2QD12 228 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 PCSK4Q6UW60 755 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 TOMM20LQ6UXN7 152 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 A0A0G2JRQ6 117 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 A0A1W2PN81 502 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 ZNF146Q15072 292 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 VSIRQ9H7M9 311 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 TOX4O94842 621 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 IGKV1-5P01602 117 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 TXN2Q99757 166 aa15.57■□□□□ 0.08
USP48-204ENST00000400301 K7EQM0 130 aa15.56■□□□□ 0.08
USP48-204ENST00000400301 ARL14EPLP0DKL9 152 aa15.56■□□□□ 0.08
USP48-204ENST00000400301 CRISP2P16562 243 aa15.56■□□□□ 0.08
USP48-204ENST00000400301 SUMO1P63165 101 aaKnown RBP15.56■□□□□ 0.08
USP48-204ENST00000400301 TNXAQ16473 311 aa15.56■□□□□ 0.08
USP48-204ENST00000400301 TIMM23BQ5SRD1 257 aa15.56■□□□□ 0.08
USP48-204ENST00000400301 FOXI3A8MTJ6 420 aaPredicted RBP15.56■□□□□ 0.08
USP48-204ENST00000400301 SLC25A5P05141 298 aaKnown RBP15.56■□□□□ 0.08
USP48-204ENST00000400301 IL15RAQ13261 267 aa15.56■□□□□ 0.08
USP48-204ENST00000400301 SSC4DQ8WTU2 575 aa15.56■□□□□ 0.08
USP48-204ENST00000400301 PMCHP20382 165 aa15.56■□□□□ 0.08
USP48-204ENST00000400301 OR1L4Q8NGR5 311 aa15.56■□□□□ 0.08
USP48-204ENST00000400301 PAX6P26367 422 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 OR51M1Q9H341 326 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 IDI2-AS1Q9NZ38 188 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 CHRDL1Q9BU40 450 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 A0A087WWC5 75 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 APELAP0DMC3 54 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 FAM27E3Q08E93 113 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 FOXF2Q12947 444 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 RNFT1Q5M7Z0 435 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 Q6P435 159 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 MS4A5Q9H3V2 200 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 CRIM1Q9NZV1 1036 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 ONECUT1Q9UBC0 465 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 CLCF1Q9UBD9 225 aa15.55■□□□□ 0.08
USP48-204ENST00000400301 A0A087X0M5 115 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 A0A1B0GX30 115 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 ATXN7O15265 892 aaPredicted RBP15.54■□□□□ 0.08
USP48-204ENST00000400301 RBP4P02753 201 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 CD3EP07766 207 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 RAB4AP20338 218 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 KRTCAP3Q53RY4 240 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 ETFRF1Q6IPR1 90 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 Q6ZRM9 215 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 CYP2G1PQ6ZSU1 146 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 ZNF714Q96N38 554 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 SDF2L1Q9HCN8 221 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 TMEM131Q92545 1883 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 ZNF503-AS2A6NEH8 195 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 SNRPCP09234 159 aaKnown RBP15.54■□□□□ 0.08
USP48-204ENST00000400301 TRBV6-6A0A0A6YYG2 114 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 GATCO43716 136 aaKnown RBP15.54■□□□□ 0.08
USP48-204ENST00000400301 OR4X1Q8NH49 305 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 ZDHHC8Q9ULC8 765 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 DOCK11Q5JSL3 2073 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 HSBP1O75506 76 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 OR4A8P0C604 315 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 PRRX1P54821 245 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 TXNDC17Q9BRA2 123 aa15.54■□□□□ 0.08
USP48-204ENST00000400301 IER3P46695 156 aa15.53■□□□□ 0.08
USP48-204ENST00000400301 CHEK1O14757 476 aa15.53■□□□□ 0.08
USP48-204ENST00000400301 ACAA1P09110 424 aaPredicted RBP15.53■□□□□ 0.08
USP48-204ENST00000400301 RTP5Q14D33 572 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms