RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 NPIPB4C9JG80 1138 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 WISP1O95388 367 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 RPLP1P05386 114 aaKnown RBP9.17□□□□□ -0.94
CCDC40-204ENST00000397545 ARL14EPLP0DKL9 152 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 FGF5P12034 268 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 CRYBB3P26998 211 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 SUCLG1P53597 346 aaKnown RBP9.17□□□□□ -0.94
CCDC40-204ENST00000397545 STPG1Q5TH74 334 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 FAM214BQ7L5A3 538 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 ITLN1Q8WWA0 313 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 OPN3Q9H1Y3 402 aaPredicted RBP9.17□□□□□ -0.94
CCDC40-204ENST00000397545 SPTBN4Q9H254 2564 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 C21orf140B9A014 251 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 MGST3O14880 152 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 SOD3P08294 240 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 LINC00869P0C866 280 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 HINT1P49773 126 aaPredicted RBP9.17□□□□□ -0.94
CCDC40-204ENST00000397545 STARD6P59095 220 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 OR8A1Q8NGG7 326 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 OR10S1Q8NGN2 331 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 ZDHHC16Q969W1 377 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 GALNT14Q96FL9 552 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 GMPPAQ96IJ6 420 aaPredicted RBP9.17□□□□□ -0.94
CCDC40-204ENST00000397545 NUDT16L1Q9BRJ7 211 aaKnown RBP9.17□□□□□ -0.94
CCDC40-204ENST00000397545 ASCL3Q9NQ33 180 aa9.17□□□□□ -0.94
CCDC40-204ENST00000397545 A0A0G2JMM0 328 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 A0A1W2PPB8 328 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 A0A1W2PRS3 328 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 FBLL1A6NHQ2 334 aaKnown RBP9.16□□□□□ -0.94
CCDC40-204ENST00000397545 KIR3DP1A8MWS1 328 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 ATXN7O15265 892 aaPredicted RBP9.16□□□□□ -0.94
CCDC40-204ENST00000397545 GNG7O60262 68 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 SMPD2O60906 423 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 SRP19P09132 144 aaKnown RBP9.16□□□□□ -0.94
CCDC40-204ENST00000397545 CBLN1P23435 193 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 CCL20P78556 96 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 CFHR1Q03591 330 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 C10orf128Q5T292 105 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 LINC00596Q86U02 117 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 EIF4E3Q8N5X7 224 aaKnown RBP9.16□□□□□ -0.94
CCDC40-204ENST00000397545 UFC1Q9Y3C8 167 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 ODAMA1E959 279 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 RAB29O14966 203 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 NPIPB7O75200 414 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 CLPSP04118 112 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 HIST1H1BP16401 226 aaKnown RBP9.16□□□□□ -0.94
CCDC40-204ENST00000397545 UCP3P55916 312 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 MARS2Q96GW9 593 aaKnown RBP9.16□□□□□ -0.94
CCDC40-204ENST00000397545 PAXXQ9BUH6 204 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 A0A0A6YYD4 124 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 PQLC2LA1A4F0 135 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 ORM1P02763 201 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 SSX8Q7RTT4 187 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 KLF14Q8TD94 323 aaPredicted RBP9.16□□□□□ -0.94
CCDC40-204ENST00000397545 SSBP3Q9BWW4 388 aaPredicted RBP9.16□□□□□ -0.94
CCDC40-204ENST00000397545 GLRX2Q9NS18 164 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 IGF2RP11717 2491 aa9.16□□□□□ -0.94
CCDC40-204ENST00000397545 THADAQ6YHU6 1953 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 IGKV1D-13A0A0B4J2D9 117 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 RNF224P0DH78 156 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 IGKV1-13P0DP09 117 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 PRRX1P54821 245 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 KCNMB1Q16558 191 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 KRTCAP3Q53RY4 240 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 MRPL13Q9BYD1 178 aaKnown RBP9.15□□□□□ -0.94
CCDC40-204ENST00000397545 MRPL18Q9H0U6 180 aaKnown RBP9.15□□□□□ -0.94
CCDC40-204ENST00000397545 LOC389332A0A1B0GUA5 103 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 hCG_38984A0A1B0GV85 526 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 TMEM210A6NLX4 147 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 RRHO14718 337 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 KBTBD11O94819 623 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 CD40P25942 277 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 IBA57Q5T440 356 aaKnown RBP9.15□□□□□ -0.94
CCDC40-204ENST00000397545 ZNF645Q8N7E2 425 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 DNASE2BQ8WZ79 361 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 DCTN5Q9BTE1 182 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 DDA1Q9BW61 102 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 PRDM14Q9GZV8 571 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 DMRT1Q9Y5R6 373 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 RFNGQ9Y644 331 aa9.15□□□□□ -0.94
CCDC40-204ENST00000397545 FAM90A10PA6NDY2 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 FAM90A18PA6NE21 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 FAM90A16PA6NEW6 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 FAM90A20PA6NIJ5 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 FAM90A8PA6NJQ4 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 FAM90A7PA6NKC0 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 FAM90A22PA8MWA6 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 FAM90A12PA8MX19 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 FAM90A5PA8MXJ8 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 FAM90A23PA8MXZ1 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 J3QR89 54 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 FAM90A15PP0C7V4 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 FAM90A13PP0C7W8 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 FAM90A14PP0C7W9 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 FAM90A24PP0C7X0 464 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 ZNRF1Q8ND25 227 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 Q8WTZ3 238 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 TM2D1Q9BX74 207 aa9.15□□□□□ -0.95
CCDC40-204ENST00000397545 CISD1Q9NZ45 108 aaKnown RBP9.15□□□□□ -0.95
CCDC40-204ENST00000397545 ZDHHC8Q9ULC8 765 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms