RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 MARCH11A6NNE9 402 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 CD160O95971 181 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 ASCL5Q7RTU5 278 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 HIST1H2BLQ99880 126 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 IGHV3-72A0A0B4J1Y9 119 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 SS18L1O75177 396 aaPredicted RBP10.17□□□□□ -0.78
SYNPO-202ENST00000394243 DXOO77932 396 aaKnown RBP10.17□□□□□ -0.78
SYNPO-202ENST00000394243 CISD3P0C7P0 127 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 TBR1Q16650 682 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 SLC25A10Q9UBX3 287 aaPredicted RBP10.17□□□□□ -0.78
SYNPO-202ENST00000394243 ZP4Q12836 540 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 MDP1Q86V88 176 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 RAB1BQ9H0U4 201 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 SHISA7A6NL88 538 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 NDUFA3O95167 84 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 UCP3P55916 312 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 PSG4Q00888 419 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 RIPPLY2Q5TAB7 128 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 VKORC1L1Q8N0U8 176 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 FOCADQ5VW36 1801 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 GFI1BQ5VTD9 330 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 CCL3P10147 92 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 CA7P43166 264 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 MAGEA5P43359 124 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 Q6ZS52 159 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 ARHGEF17Q96PE2 2063 aaPredicted RBP10.16□□□□□ -0.78
SYNPO-202ENST00000394243 LURAP1LQ8IV03 231 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 CGAP01215 116 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 IGHV3-48P01763 117 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 LOXL3P58215 753 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 RPL23P62829 140 aaKnown RBP10.16□□□□□ -0.78
SYNPO-202ENST00000394243 KCNMB1Q16558 191 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 C9orf40Q8IXQ3 194 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 KIR2DL4Q99706 377 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 TMEM56-RWDD3S4R434 201 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 KIAA1217Q5T5P2 1943 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 C17orf51A8MQB3 221 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 DRD3P35462 400 aa10.16□□□□□ -0.78
SYNPO-202ENST00000394243 ATP5G3P48201 142 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 HSPE1P61604 102 aaKnown RBP10.15□□□□□ -0.78
SYNPO-202ENST00000394243 FAM27BQ5VT28 67 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 FAM90A27PA6NNH2 459 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 REG1AP05451 166 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 PSG9Q00887 426 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 NPCDR1Q9BY65 106 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 TRAV9-2A0A087WT02 112 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 A0A1W2PQM1 296 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 HOXC4P09017 264 aaPredicted RBP10.15□□□□□ -0.78
SYNPO-202ENST00000394243 SLC25A53Q5H9E4 307 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 TIMM23BQ5SRD1 257 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 METTL26Q96S19 204 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 C19orf24Q9BVV8 132 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 BCORQ6W2J9 1755 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 SCN7AQ01118 1682 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 HEPN1Q6WQI6 88 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 MRPL32Q9BYC8 188 aaKnown RBP10.15□□□□□ -0.78
SYNPO-202ENST00000394243 IGHV4-39P01824 125 aa10.15□□□□□ -0.78
SYNPO-202ENST00000394243 FAM74A4Q5TZK3 123 aa10.15□□□□□ -0.79
SYNPO-202ENST00000394243 HIST3H2BBQ8N257 126 aa10.15□□□□□ -0.79
SYNPO-202ENST00000394243 Q96M66 194 aa10.15□□□□□ -0.79
SYNPO-202ENST00000394243 DLL3Q9NYJ7 618 aa10.15□□□□□ -0.79
SYNPO-202ENST00000394243 SRFP11831 508 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 TP53BP1Q12888 1972 aaPredicted RBP10.14□□□□□ -0.79
SYNPO-202ENST00000394243 ATP5LO75964 103 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 ICAM4Q14773 271 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 OR2K2Q8NGT1 345 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 HEXA-AS1Q9H8Q6 139 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 IGLV1-36A0A0B4J1U3 117 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 MUC21A0A0G2JKD1 596 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 MUC21A0A140T8X8 626 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 TMEM229AB2RXF0 380 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 NGFRP08138 427 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 SOX8P57073 446 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 PRSS53Q2L4Q9 553 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 MUC21Q5SSG8 566 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 EBLN2Q6P2I7 272 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 PKD1L3Q7Z443 1732 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 DYNLRB2Q8TF09 96 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 ESPL1Q14674 2120 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 TFF3Q07654 80 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 C10orf128Q5T292 105 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 OR5AN1Q8NGI8 311 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 ARRDC1-AS1Q9H2J1 176 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 TCF19Q9Y242 345 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 LINC01565O15544 149 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 PHF7Q9BWX1 381 aaPredicted RBP10.14□□□□□ -0.79
SYNPO-202ENST00000394243 TMEM262E9PQX1 116 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 MGST3O14880 152 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 IL6RP08887 468 aaPredicted RBP10.14□□□□□ -0.79
SYNPO-202ENST00000394243 LIFP15018 202 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 GPX4P36969 197 aaPredicted RBP10.14□□□□□ -0.79
SYNPO-202ENST00000394243 LINC00305Q7Z4B0 112 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 SCGB3A1Q96QR1 104 aa10.14□□□□□ -0.79
SYNPO-202ENST00000394243 C11orf68Q9H3H3 251 aaKnown RBP10.14□□□□□ -0.79
SYNPO-202ENST00000394243 IGKV3OR2-268A0A0C4DH90 116 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 IZUMO1RA6ND01 250 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 TNFSF14O43557 240 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 SRSF4Q08170 494 aaKnown RBP10.13□□□□□ -0.79
SYNPO-202ENST00000394243 ZNF56Q15929 161 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 ORAOV1Q8WV07 137 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms