RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SFRP2Q96HF1 295 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 SMIM8Q96KF7 97 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 B9A039 149 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 H3BRM9 83 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 PGPEP1Q9NXJ5 209 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 GPR132Q9UNW8 380 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 ANKRD36A6QL64 1941 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 SYNGR3O43761 229 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 ARF6P62330 175 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 MEF2CQ06413 473 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 SNAI3Q3KNW1 292 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 JKAMPQ9P055 326 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 A0A1W2PQF6 199 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 C7orf66A4D0T2 115 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 F12P00748 615 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 MDKP21741 143 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 KLF14Q8TD94 323 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 ELF5Q9UKW6 265 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 SCN4AP35499 1836 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 CLDND2Q8NHS1 167 aa10.96□□□□□ -0.65
CCDC88C-204ENST00000389857 PLAC1Q9HBJ0 212 aa10.96□□□□□ -0.65
CCDC88C-204ENST00000389857 FOXD3Q9UJU5 478 aaPredicted RBP10.96□□□□□ -0.65
CCDC88C-204ENST00000389857 HBBP68871 147 aa10.96□□□□□ -0.65
CCDC88C-204ENST00000389857 C21orf62-AS1Q17RA5 79 aa10.96□□□□□ -0.65
CCDC88C-204ENST00000389857 BEX4Q9NWD9 120 aaPredicted RBP10.96□□□□□ -0.65
CCDC88C-204ENST00000389857 PLSCR2Q9NRY7 297 aa10.96□□□□□ -0.65
CCDC88C-204ENST00000389857 NKX2-8O15522 239 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 RECKO95980 971 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 CELA2AP08217 269 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 CRYBB3P26998 211 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 LIMS1P48059 325 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 DCAF12L2Q5VW00 463 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 RARRES2Q99969 163 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 TGIF2-C20orf24A0A0A6YYL0 155 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 KLK2P20151 261 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 ZNF506Q5JVG8 444 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 LINC00470Q9BZP3 86 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 TDRD6O60522 2096 aaKnown RBP10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 TMEM250H0YL14 139 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 CD300CQ08708 224 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 GOLT1AQ6ZVE7 132 aa10.96□□□□□ -0.66
CCDC88C-204ENST00000389857 ARFGEF1Q9Y6D6 1849 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 DICER1Q9UPY3 1922 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 GLI3P10071 1580 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 SCN8AQ9UQD0 1980 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 FOXI3A8MTJ6 420 aaPredicted RBP10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 P2RY4P51582 365 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 NUDT10Q8NFP7 164 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 NUDT11Q96G61 164 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 RBMY1BA6NDE4 496 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 RBMY1EA6NEQ0 496 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 ZG16O60844 167 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 RBMY1DP0C7P1 496 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 RBMY1A1P0DJD3 496 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 RBMY1CP0DJD4 496 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 LCN2P80188 198 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 LINC00305Q7Z4B0 112 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 SLC22A18ASQ8N1D0 253 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 ASIPP42127 132 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 STARD6P59095 220 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 RFLNBQ8N5W9 214 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 LINC00469Q8N7U9 141 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 RBBP6Q7Z6E9 1792 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 C1QTNF9BB2RNN3 333 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 GHRHP01286 108 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 IGHMP01871 453 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 TRGV3P03979 118 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 IFI6P09912 130 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 GZMMP51124 257 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 PNKDQ8N490 385 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 RIPPLY2Q5TAB7 128 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 TCF23Q7RTU1 214 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 TMEM160Q9NX00 188 aa10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 MRPL16Q9NX20 251 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 POLR2AP24928 1970 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-204ENST00000389857 PSMB11A5LHX3 300 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 TMEM170BQ5T4T1 132 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 TMEM74BQ9NUR3 256 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 PTPRZ1P23471 2315 aaPredicted RBP10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 ZNF815PA8K554 130 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 OTX1P32242 354 aaPredicted RBP10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 CD69Q07108 199 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 CYP2G1PQ6ZSU1 146 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 HIST1H2BAQ96A08 127 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 FAM206AQ9NX38 181 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 CENPVL1A0A0U1RR11 272 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 A1L4Q6 167 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 A0A0G2JLM5 398 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 SAMD13Q5VXD3 122 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 ZNF414Q96IQ9 312 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 NABP2Q9BQ15 211 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 DNASE2BQ8WZ79 361 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 TCF19Q9Y242 345 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 APOBEC3AP31941 199 aaPredicted RBP10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 C1orf100Q5SVJ3 147 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 AICDAQ9GZX7 198 aa10.94□□□□□ -0.66
CCDC88C-204ENST00000389857 MYO7AQ13402 2215 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 OR11H12B2RN74 326 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 IGKV3-20P01619 116 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms