RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 SPINK9Q5DT21 86 aa14.83□□□□□ -0.04
SQSTM1-202ENST00000389805 ZNF766Q5HY98 468 aa14.83□□□□□ -0.04
SQSTM1-202ENST00000389805 TUBG2Q9NRH3 451 aa14.83□□□□□ -0.04
SQSTM1-202ENST00000389805 CLN8Q9UBY8 286 aa14.83□□□□□ -0.04
SQSTM1-202ENST00000389805 ZFP30Q9Y2G7 519 aa14.83□□□□□ -0.04
SQSTM1-202ENST00000389805 ANKRD30BLA7E2S9 258 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 ACSF3Q4G176 576 aaPredicted RBP14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 GCSAMLQ5JQS6 135 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 ZNF324BQ6AW86 544 aaPredicted RBP14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 TMEM144Q7Z5S9 345 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 BAGE3Q86Y29 109 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 BAGE2Q86Y30 109 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 BCL2L2Q92843 193 aaPredicted RBP14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 USF3Q68DE3 2245 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 TRAV24A0A0B4J272 114 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 HOXA4Q00056 320 aaPredicted RBP14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 ALKBH6Q3KRA9 238 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 FBXW9Q5XUX1 488 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 STPG4Q8N801 248 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 TNRC6AQ8NDV7 1962 aaKnown RBP14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 CRISP2P16562 243 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 MSMO1Q15800 293 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 OR5AU1Q8NGC0 362 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 OR1L1Q8NH94 360 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 CEP250Q9BV73 2442 aa14.82□□□□□ -0.04
SQSTM1-202ENST00000389805 NKX2-8O15522 239 aa14.81□□□□□ -0.04
SQSTM1-202ENST00000389805 ZNF585BQ52M93 769 aa14.81□□□□□ -0.04
SQSTM1-202ENST00000389805 SAXO1Q8IYX7 474 aa14.81□□□□□ -0.04
SQSTM1-202ENST00000389805 LOXL4Q96JB6 756 aa14.81□□□□□ -0.04
SQSTM1-202ENST00000389805 BTF3L4Q96K17 158 aa14.81□□□□□ -0.04
SQSTM1-202ENST00000389805 SLC35E1Q96K37 410 aa14.81□□□□□ -0.04
SQSTM1-202ENST00000389805 TRAV38-1A0A0B4J264 116 aa14.81□□□□□ -0.04
SQSTM1-202ENST00000389805 MLNRO43193 412 aa14.81□□□□□ -0.04
SQSTM1-202ENST00000389805 VENTXO95231 258 aa14.81□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A10PA6NDY2 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A18PA6NE21 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A16PA6NEW6 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A20PA6NIJ5 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A8PA6NJQ4 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A7PA6NKC0 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A22PA8MWA6 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A12PA8MX19 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A5PA8MXJ8 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A23PA8MXZ1 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 LYZL6O75951 148 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A15PP0C7V4 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A13PP0C7W8 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A14PP0C7W9 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM90A24PP0C7X0 464 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 PTTG1IPP53801 180 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 UBE2NP61088 152 aaKnown RBP14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 FAM58AQ8N1B3 248 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 SLC17A3O00476 420 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 GNG3P63215 75 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 TRIP6Q15654 476 aaKnown RBP14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 SFRP2Q96HF1 295 aa14.8□□□□□ -0.04
SQSTM1-202ENST00000389805 C20orf202A1L168 122 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 SH2D1BO14796 132 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 KRASP01116 189 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 SLC25A6P12236 298 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 KITLGP21583 273 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 CCL11P51671 97 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 ETFRF1Q6IPR1 90 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 Q6ZS49 121 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 WDR86Q86TI4 376 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 FBXL7Q9UJT9 491 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 TRBV20OR9-2A0A075B6H5 130 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 MDFIC2A0A1B0GVS7 189 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 CCL25O15444 150 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 SPINK4O60575 86 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 NDUFB8O95169 186 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 IGLV2-14P01704 120 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 CTXN2P0C2S0 81 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 COX5AP20674 150 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 COMPP49747 757 aaPredicted RBP14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 FGFRL1Q8N441 504 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 MRPL18Q9H0U6 180 aaKnown RBP14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 DLL3Q9NYJ7 618 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 OTOGLQ3ZCN5 2332 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 SIRPB1O00241 398 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 ZNF90Q03938 601 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 ZDHHC16Q969W1 377 aa14.79□□□□□ -0.04
SQSTM1-202ENST00000389805 COL8A2P25067 703 aa14.78□□□□□ -0.04
SQSTM1-202ENST00000389805 LSM10Q969L4 123 aaKnown RBP14.78□□□□□ -0.04
SQSTM1-202ENST00000389805 F6UZH7 168 aa14.78□□□□□ -0.04
SQSTM1-202ENST00000389805 OR5G3P0C626 314 aa14.78□□□□□ -0.04
SQSTM1-202ENST00000389805 PAFAH1B2P68402 229 aa14.78□□□□□ -0.04
SQSTM1-202ENST00000389805 TMEM14EPQ6UXP3 125 aa14.78□□□□□ -0.04
SQSTM1-202ENST00000389805 TXN2Q99757 166 aa14.78□□□□□ -0.04
SQSTM1-202ENST00000389805 GP6Q9HCN6 339 aa14.78□□□□□ -0.04
SQSTM1-202ENST00000389805 MGAQ8IWI9 3026 aa14.78□□□□□ -0.04
SQSTM1-202ENST00000389805 CDC34P49427 236 aaPredicted RBP14.77□□□□□ -0.04
SQSTM1-202ENST00000389805 RANP62826 216 aaKnown RBP14.77□□□□□ -0.04
SQSTM1-202ENST00000389805 RBX1P62877 108 aa14.77□□□□□ -0.04
SQSTM1-202ENST00000389805 FOXL1Q12952 345 aa14.77□□□□□ -0.04
SQSTM1-202ENST00000389805 SPATA45Q537H7 98 aa14.77□□□□□ -0.04
SQSTM1-202ENST00000389805 NPCDR1Q9BY65 106 aa14.77□□□□□ -0.04
SQSTM1-202ENST00000389805 MPC1Q9Y5U8 109 aa14.77□□□□□ -0.04
SQSTM1-202ENST00000389805 IGHV1-2P23083 117 aa14.77□□□□□ -0.05
SQSTM1-202ENST00000389805 G6PCP35575 357 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms