RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TMEM218A2RU14 115 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 C22orf46C9J442 243 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 C15orf65H3BRN8 121 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 SRSF3P84103 164 aaKnown RBP8.33□□□□□ -1.08
VPS53-202ENST00000389040 HTD2P86397 168 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 EIF4EBP1Q13541 118 aaPredicted RBP8.33□□□□□ -1.08
VPS53-202ENST00000389040 CLINT1Q14677 625 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 IZUMO4Q1ZYL8 232 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 BTNL8Q6UX41 500 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 HSD17B11Q8NBQ5 300 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 C5orf30Q96GV9 206 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 SH3BGRL3Q9H299 93 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 C7orf69Q9H7B7 122 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 RAB9BQ9NP90 201 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 LINC00312Q9Y6C7 94 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 IGHV3-43A0A0B4J1X8 118 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 FCN3O75636 299 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 IGHV3-43DP0DP04 118 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 RAB5CP51148 216 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 PAX9P55771 341 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 RPL23AP62750 156 aaKnown RBP8.33□□□□□ -1.08
VPS53-202ENST00000389040 DEFA5Q01523 94 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 CATR1Q13166 79 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 CR1LQ2VPA4 569 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 KIAA2026Q5HYC2 2103 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 ODF3L1Q8IXM7 274 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 OR5C1Q8NGR4 320 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 RFESDQ8TAC1 157 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 NANPQ8TBE9 248 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 H1FXQ92522 213 aaKnown RBP8.33□□□□□ -1.08
VPS53-202ENST00000389040 RAB40CQ96S21 281 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 LPAR2Q9HBW0 351 aa8.33□□□□□ -1.08
VPS53-202ENST00000389040 MEX3AA1L020 520 aaKnown RBP8.32□□□□□ -1.08
VPS53-202ENST00000389040 RAMP3O60896 148 aa8.32□□□□□ -1.08
VPS53-202ENST00000389040 CST7O76096 145 aa8.32□□□□□ -1.08
VPS53-202ENST00000389040 GZMHP20718 246 aa8.32□□□□□ -1.08
VPS53-202ENST00000389040 DYNLT3P51808 116 aa8.32□□□□□ -1.08
VPS53-202ENST00000389040 RPL30P62888 115 aaKnown RBP8.32□□□□□ -1.08
VPS53-202ENST00000389040 BTN1A1Q13410 526 aa8.32□□□□□ -1.08
VPS53-202ENST00000389040 DUX4L9Q6RFH8 374 aaPredicted RBP8.32□□□□□ -1.08
VPS53-202ENST00000389040 STX12Q86Y82 276 aa8.32□□□□□ -1.08
VPS53-202ENST00000389040 LYPD6BQ8NI32 183 aa8.32□□□□□ -1.08
VPS53-202ENST00000389040 SMR3AQ99954 134 aa8.32□□□□□ -1.08
VPS53-202ENST00000389040 MMP24Q9Y5R2 645 aa8.32□□□□□ -1.08
VPS53-202ENST00000389040 WSB1Q9Y6I7 421 aa8.32□□□□□ -1.08
VPS53-202ENST00000389040 TRGV10A0A0A0MS01 117 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 TXNL1O43396 289 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 SYNGR2O43760 224 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 ATG12O94817 140 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 TOX4O94842 621 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 SELLP14151 372 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 ADCYAP1P18509 176 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 CAMLGP49069 296 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 SULT1A1P50225 295 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 OXLD1Q5BKU9 147 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 FAM120AOSQ5T036 256 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 NCR3LG1Q68D85 454 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 TMEM200BQ69YZ2 307 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 FGFRL1Q8N441 504 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 TMEM217Q8N7C4 229 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 TCTEX1D1Q8N7M0 179 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 TCTEX1D2Q8WW35 142 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 EDARADDQ8WWZ3 215 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 GAL3ST2Q9H3Q3 398 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 GSX1Q9H4S2 264 aaPredicted RBP8.31□□□□□ -1.08
VPS53-202ENST00000389040 TMEM231Q9H6L2 316 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 LINC00574Q9H8X3 128 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 TREM1Q9NP99 234 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 UQCC1Q9NVA1 299 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 COA4Q9NYJ1 87 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 CACFD1Q9UGQ2 172 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 JPT1Q9UK76 154 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 PSG11Q9UQ72 335 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 FAM96BQ9Y3D0 163 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 STRAPQ9Y3F4 350 aaKnown RBP8.31□□□□□ -1.08
VPS53-202ENST00000389040 F8P00451 2351 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 C17orf98A8MV24 154 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 FAM90A26D6RGX4 464 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 H3BP45 60 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 TOR1AO14656 332 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 AGPAT2O15120 278 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 ST8SIA5O15466 376 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 PRH1P02810 166 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 PRTN3P24158 256 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 ATP6V0CP27449 155 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 FHITP49789 147 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 ARHGDIBP52566 201 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 EDDM3BP56851 147 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 ZNF616Q08AN1 781 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 LTC4SQ16873 150 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 TMEM30BQ3MIR4 351 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 OR2B11Q5JQS5 317 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 C10orf91Q5T1B1 145 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 ATRAIDQ6UW56 229 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 ZNF66Q6ZN08 573 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 SPAG16Q8N0X2 631 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 OR10A7Q8NGE5 316 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 FAM216AQ8WUB2 273 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 ZNF714Q96N38 554 aa8.31□□□□□ -1.08
VPS53-202ENST00000389040 TSNAXQ99598 290 aaKnown RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms