RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 PATZ1Q9HBE1 687 aaKnown RBP11.79□□□□□ -0.52
CLCNKA-202ENST00000375692 KCNIP1Q9NZI2 227 aa11.79□□□□□ -0.52
CLCNKA-202ENST00000375692 POLR3KQ9Y2Y1 108 aaPredicted RBP11.79□□□□□ -0.52
CLCNKA-202ENST00000375692 IGHV3-43A0A0B4J1X8 118 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 RBFOX2O43251 390 aaKnown RBP eCLIP11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 SOX15O60248 233 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 IGHV3-43DP0DP04 118 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 ZNF826PQ6ZT77 177 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 H2BFWTQ7Z2G1 175 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 TPRX1Q8N7U7 411 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 SDSLQ96GA7 329 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 GRIFINA4D1Z8 144 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 DEFB108AA8MXU0 73 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 HAND1O96004 215 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 HBZP02008 142 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 CD82P27701 267 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 PPP1CBP62140 327 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 EIF4EBP1Q13541 118 aaPredicted RBP11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 ZNF146Q15072 292 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 SGMS2Q8NHU3 365 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 TTTY12Q9BZ98 90 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 GP6Q9HCN6 339 aa11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 DSPP15924 2871 aaKnown RBP11.78□□□□□ -0.52
CLCNKA-202ENST00000375692 LINC00473A8K010 186 aa11.77□□□□□ -0.52
CLCNKA-202ENST00000375692 ABHD17BQ5VST6 288 aa11.77□□□□□ -0.52
CLCNKA-202ENST00000375692 CYB5R2Q6BCY4 276 aa11.77□□□□□ -0.52
CLCNKA-202ENST00000375692 FIP1L1Q6UN15 594 aaKnown RBP11.77□□□□□ -0.52
CLCNKA-202ENST00000375692 TMEM144Q7Z5S9 345 aa11.77□□□□□ -0.52
CLCNKA-202ENST00000375692 TMEM251Q8N6I4 163 aa11.77□□□□□ -0.52
CLCNKA-202ENST00000375692 RFESDQ8TAC1 157 aa11.77□□□□□ -0.52
CLCNKA-202ENST00000375692 MRGPRDQ8TDS7 321 aa11.77□□□□□ -0.52
CLCNKA-202ENST00000375692 PXMP4Q9Y6I8 212 aa11.77□□□□□ -0.52
CLCNKA-202ENST00000375692 SPENQ96T58 3664 aaKnown RBP11.77□□□□□ -0.52
CLCNKA-202ENST00000375692 PRR14LQ5THK1 2151 aa11.77□□□□□ -0.52
CLCNKA-202ENST00000375692 TRBV20OR9-2A0A075B6H5 130 aa11.77□□□□□ -0.53
CLCNKA-202ENST00000375692 ERVFC1-1P60608 527 aa11.77□□□□□ -0.53
CLCNKA-202ENST00000375692 LCN2P80188 198 aa11.77□□□□□ -0.53
CLCNKA-202ENST00000375692 VWC2Q2TAL6 325 aa11.77□□□□□ -0.53
CLCNKA-202ENST00000375692 Q6ZR03 302 aa11.77□□□□□ -0.53
CLCNKA-202ENST00000375692 PLPPR2Q96GM1 343 aa11.77□□□□□ -0.53
CLCNKA-202ENST00000375692 QTRT1Q9BXR0 403 aaKnown RBP11.77□□□□□ -0.53
CLCNKA-202ENST00000375692 POLDIP2Q9Y2S7 368 aa11.77□□□□□ -0.53
CLCNKA-202ENST00000375692 ACACAQ13085 2346 aa11.77□□□□□ -0.53
CLCNKA-202ENST00000375692 C15orf62A8K5M9 175 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 ZNF705FA8MVS1 300 aaPredicted RBP11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 CLDN14O95500 239 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 ZNF705DP0CH99 300 aaPredicted RBP11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 ZNF705BP0CI00 300 aaPredicted RBP11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 THBS3P49746 956 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 RAB4BP61018 213 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 BCL2L2Q92843 193 aaPredicted RBP11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 MS4A10Q96PG2 267 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 B4GALT7Q9UBV7 327 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 NAGKQ9UJ70 344 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 ATMQ13315 3056 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 TMEM30CPA0ZSE6 113 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 C17orf112F2Z3M2 114 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 ADMP35318 185 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 FOXC1Q12948 553 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 CATR1Q13166 79 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 C1orf194Q5T5A4 169 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 Q8IYB0 196 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 IMMP2LQ96T52 175 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 ELOVL5Q9NYP7 299 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 CACNA1GO43497 2377 aa11.76□□□□□ -0.53
CLCNKA-202ENST00000375692 A0A1W2PPV4 95 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 RAB29O14966 203 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 CD1BP29016 333 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 SSTR5P35346 364 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 CCL11P51671 97 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 PLGLB1Q02325 96 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 OR1C1Q15619 314 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 LTC4SQ16873 150 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 TDRG1Q3Y452 100 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 SFRP2Q96HF1 295 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 FER1L6-AS2Q96M78 137 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 TBX15Q96SF7 602 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 PDE6DO43924 150 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 RPL29P47914 159 aaKnown RBP11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 SOX8P57073 446 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 ZBTB34Q8NCN2 500 aa11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 CIB3Q96Q77 187 aaPredicted RBP11.75□□□□□ -0.53
CLCNKA-202ENST00000375692 MARCH11A6NNE9 402 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 M0R143 59 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 TMPRSS2O15393 492 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 OR9G9P0C7N8 305 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 ARL14EPLP0DKL9 152 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 GABRA2P47869 451 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 FOXL1Q12952 345 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 SLC25A40Q8TBP6 338 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 NINJ1Q92982 152 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 COQ2Q96H96 371 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 DCTN5Q9BTE1 182 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 METRNQ9UJH8 293 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 PSG11Q9UQ72 335 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 WDR83OSQ9Y284 106 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 SCO2A0A1W2PP80 73 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 SMPD2O60906 423 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 TBC1D28Q2M2D7 210 aa11.74□□□□□ -0.53
CLCNKA-202ENST00000375692 ZNF766Q5HY98 468 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms