RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SLC35D1Q9NTN3 355 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 DPM3Q9P2X0 92 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 UBQLN2Q9UHD9 624 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 GPR132Q9UNW8 380 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 KPTNQ9Y664 436 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 C3orf85A0A1B0GTC6 90 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 GOSR2O14653 212 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 MMP9P14780 707 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 PRSS57Q6UWY2 283 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 SLC25A48Q6ZT89 311 aaKnown RBP7.45□□□□□ -1.22
USP4-202ENST00000351842 LYZL2Q7Z4W2 148 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 ZNF383Q8NA42 475 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 KCNIP3Q9Y2W7 256 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 H3BUX3 64 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 SLC25A17O43808 307 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 IGLV2-14P01704 120 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 C4BPBP20851 252 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 LPAR6P43657 344 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 ANKRD55Q3KP44 614 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 HCP5Q6MZN7 132 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 LHFPL1Q86WI0 220 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 NANPQ8TBE9 248 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 MBD2Q9UBB5 411 aa7.45□□□□□ -1.22
USP4-202ENST00000351842 KCNAB3O43448 404 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 TSC22D2O75157 780 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 CT45A6P0DMU7 189 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 CT45A5P0DMU8 189 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 CT45A7P0DMV0 189 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 CD34P28906 385 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 RAB7AP51149 207 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 PAX8Q06710 450 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 MMDQ15546 238 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 C2orf68Q2NKX9 166 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 DEFB112Q30KQ8 113 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 ARSJQ5FYB0 599 aaPredicted RBP7.44□□□□□ -1.22
USP4-202ENST00000351842 STX12Q86Y82 276 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 ODF3L1Q8IXM7 274 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 HARBI1Q96MB7 349 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 SSX3Q99909 188 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 MAGT1Q9H0U3 335 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 OPN4Q9UHM6 478 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 ANAPC10Q9UM13 185 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 IGHV1-69DA0A0B4J2H0 117 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 M0R1W7 72 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 CFDP00746 253 aaPredicted RBP7.44□□□□□ -1.22
USP4-202ENST00000351842 IGHV1-69P01742 117 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 CXCL2P19875 107 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 PJVKQ0ZLH3 352 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 AANATQ16613 207 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 OR8H3Q8N146 312 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 EIF4E3Q8N5X7 224 aaKnown RBP7.44□□□□□ -1.22
USP4-202ENST00000351842 CCDC71LQ8N9Z2 235 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 OR2T35Q8NGX2 323 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 FAM103A1Q9BTL3 118 aaKnown RBP7.44□□□□□ -1.22
USP4-202ENST00000351842 GPN1Q9HCN4 374 aaPredicted RBP7.44□□□□□ -1.22
USP4-202ENST00000351842 C9orf170A2RU37 121 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 GATCO43716 136 aaKnown RBP7.44□□□□□ -1.22
USP4-202ENST00000351842 CREBL2O60519 120 aaPredicted RBP7.44□□□□□ -1.22
USP4-202ENST00000351842 SNAPINO95295 136 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 IFNA2P01563 188 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 IGHV4-59P01825 116 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 SNRNP70P08621 437 aaKnown RBP7.44□□□□□ -1.22
USP4-202ENST00000351842 PAX1P15863 534 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 F2RP25116 425 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 IL3RAP26951 378 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 DUTP33316 252 aaKnown RBP7.44□□□□□ -1.22
USP4-202ENST00000351842 S100A10P60903 97 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 SUPT4H1P63272 117 aaKnown RBP7.44□□□□□ -1.22
USP4-202ENST00000351842 CATR1Q13166 79 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 TMEM128Q5BJH2 165 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 COMMD7Q86VX2 200 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 RRNAD1Q96FB5 475 aaKnown RBP7.44□□□□□ -1.22
USP4-202ENST00000351842 SCGB3A2Q96PL1 93 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 NAA60Q9H7X0 242 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 TPSG1Q9NRR2 321 aa7.44□□□□□ -1.22
USP4-202ENST00000351842 IGHV1-3A0A0C4DH29 117 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 APOA2P02652 100 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 OPCMLQ14982 345 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 C11orf87Q6NUJ2 197 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 SLC35G3Q8N808 338 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 ZNF439Q8NDP4 499 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 C8orf46Q8TAG6 207 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 FBXL15Q9H469 300 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 TENM1Q9UKZ4 2725 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 TRAV3A0A0B4J244 114 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 A8MXK9 166 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 H3BP45 60 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 IGLV1-47P01700 117 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 GAPDHP04406 335 aaKnown RBP7.43□□□□□ -1.22
USP4-202ENST00000351842 FABP1P07148 127 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 CTSDP07339 412 aaPredicted RBP7.43□□□□□ -1.22
USP4-202ENST00000351842 MEOX2P50222 304 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 FLI1Q01543 452 aaPredicted RBP7.43□□□□□ -1.22
USP4-202ENST00000351842 C10orf55Q5SWW7 151 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 GLYATL2Q8WU03 294 aa7.43□□□□□ -1.22
USP4-202ENST00000351842 MFSD2BA6NFX1 497 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 CEACAM3P40198 252 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 UBE2E1P51965 193 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 TPTE2P1Q5T6R2 138 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 RBMS3Q6XE24 437 aaKnown RBP7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms