RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 MMP24Q9Y5R2 645 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 DSCAML1Q8TD84 2053 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 ARFGEF3Q5TH69 2177 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 ADAM20O43506 726 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 ZNF737O75373 536 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 NUTF2P61970 127 aaKnown RBP10.68□□□□□ -0.7
CLK3-201ENST00000345005 TLE1Q04724 770 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 SLC25A24Q6NUK1 477 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 TRAT1Q6PIZ9 186 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 HIST3H2BBQ8N257 126 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 OR10D4PQ8NGN7 298 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 CFAP46Q8IYW2 2715 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 IGHV3OR15-7A0A075B7D8 119 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 IGKV1D-13A0A0B4J2D9 117 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 LRRC30A6NM36 301 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 MGST3O14880 152 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 CHST1O43916 411 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 TFF1P04155 84 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 IGKV1-13P0DP09 117 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 NDUFB7P17568 137 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 GRNP28799 593 aaKnown RBP10.67□□□□□ -0.7
CLK3-201ENST00000345005 HBG1P69891 147 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 HBG2P69892 147 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 EFNB3Q15768 340 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 PRR18Q8N4B5 295 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 GALMQ96C23 342 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 MS4A5Q9H3V2 200 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 RNF115Q9Y4L5 304 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 HIVEP3Q5T1R4 2406 aa10.67□□□□□ -0.7
CLK3-201ENST00000345005 ZNF727A8MUV8 499 aa10.66□□□□□ -0.7
CLK3-201ENST00000345005 B9A039 149 aa10.66□□□□□ -0.7
CLK3-201ENST00000345005 DVL1O14640 695 aa10.66□□□□□ -0.7
CLK3-201ENST00000345005 CXCL1P09341 107 aa10.66□□□□□ -0.7
CLK3-201ENST00000345005 BCL2P10415 239 aa10.66□□□□□ -0.7
CLK3-201ENST00000345005 OMGP23515 440 aa10.66□□□□□ -0.7
CLK3-201ENST00000345005 CCL8P80075 99 aa10.66□□□□□ -0.7
CLK3-201ENST00000345005 ZNF818PQ6ZRF7 136 aa10.66□□□□□ -0.7
CLK3-201ENST00000345005 OR10V1Q8NGI7 309 aa10.66□□□□□ -0.7
CLK3-201ENST00000345005 RNASEH2CQ8TDP1 164 aaKnown RBP10.66□□□□□ -0.7
CLK3-201ENST00000345005 LSM10Q969L4 123 aaKnown RBP10.66□□□□□ -0.7
CLK3-201ENST00000345005 R3HDM4Q96D70 268 aa10.66□□□□□ -0.7
CLK3-201ENST00000345005 BTF3L4Q96K17 158 aa10.66□□□□□ -0.7
CLK3-201ENST00000345005 OR1A1Q9P1Q5 309 aa10.66□□□□□ -0.7
CLK3-201ENST00000345005 VAX2Q9UIW0 290 aa10.66□□□□□ -0.7
CLK3-201ENST00000345005 ANKHD1Q8IWZ3 2542 aaKnown RBP10.66□□□□□ -0.7
CLK3-201ENST00000345005 A0A1B0GV50 99 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 SMCO3A2RU48 225 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 IFITM10A6NMD0 228 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 C12orf77C9JDV5 145 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 IL2RGP31785 369 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 CEBPGP53567 150 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 ERVFRD-1P60508 538 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 CDSNQ15517 529 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 CXorf66Q5JRM2 361 aaPredicted RBP10.65□□□□□ -0.7
CLK3-201ENST00000345005 NEUROG1Q92886 237 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 SDSLQ96GA7 329 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 AGMATQ9BSE5 352 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 NDUFAF3Q9BU61 184 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 NCOR1P1Q9H4R4 102 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 DYNLRB1Q9NP97 96 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 CCL28Q9NRJ3 127 aa10.65□□□□□ -0.7
CLK3-201ENST00000345005 LY86O95711 162 aa10.65□□□□□ -0.71
CLK3-201ENST00000345005 HBZP02008 142 aa10.65□□□□□ -0.71
CLK3-201ENST00000345005 TRGC2P03986 189 aa10.65□□□□□ -0.71
CLK3-201ENST00000345005 GZMHP20718 246 aa10.65□□□□□ -0.71
CLK3-201ENST00000345005 FGF7P21781 194 aa10.65□□□□□ -0.71
CLK3-201ENST00000345005 GAGE1Q13065 139 aa10.65□□□□□ -0.71
CLK3-201ENST00000345005 C4orf17Q53FE4 359 aa10.65□□□□□ -0.71
CLK3-201ENST00000345005 STUMQ69YW2 141 aa10.65□□□□□ -0.71
CLK3-201ENST00000345005 TGIF2LYQ8IUE0 185 aa10.65□□□□□ -0.71
CLK3-201ENST00000345005 SAP30LQ9HAJ7 183 aa10.65□□□□□ -0.71
CLK3-201ENST00000345005 SDF2L1Q9HCN8 221 aa10.65□□□□□ -0.71
CLK3-201ENST00000345005 PKDREJQ9NTG1 2253 aa10.65□□□□□ -0.71
CLK3-201ENST00000345005 TGIF2-C20orf24A0A0A6YYL0 155 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 SPINT2O43291 252 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 CST7O76096 145 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 SERPINE2P07093 398 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 F2RP25116 425 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 RAB11AP62491 216 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 TFF3Q07654 80 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 EDDM3AQ14507 147 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 FAM201AQ5SY85 155 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 TEX36Q5VZQ5 186 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 ZNF787Q6DD87 383 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 THNSL2Q86YJ6 484 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 ZCCHC24Q8N2G6 241 aaKnown RBP10.64□□□□□ -0.71
CLK3-201ENST00000345005 ZNF808Q8N4W9 903 aaPredicted RBP10.64□□□□□ -0.71
CLK3-201ENST00000345005 OR10A7Q8NGE5 316 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 OR1L1Q8NH94 360 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 MRGPRDQ8TDS7 321 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 NINJ1Q92982 152 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 ABHD14AQ9BUJ0 271 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 ZNF665Q9H7R5 613 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 RBM7Q9Y580 266 aaKnown RBP10.64□□□□□ -0.71
CLK3-201ENST00000345005 TIMM9Q9Y5J7 89 aa10.64□□□□□ -0.71
CLK3-201ENST00000345005 ODAMA1E959 279 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 PGLYRP1O75594 196 aaPredicted RBP10.63□□□□□ -0.71
CLK3-201ENST00000345005 PLAUP00749 431 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 TRGC1P0CF51 173 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 CR1LQ2VPA4 569 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms