RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 NPSP0C0P6 89 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 ABHD17BQ5VST6 288 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 DHRS13Q6UX07 377 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 TMEM208Q9BTX3 173 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 QTRT1Q9BXR0 403 aaKnown RBP18.68■□□□□ 0.58
TRIM28-202ENST00000341753 MSL2Q9HCI7 577 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 WNT9BO14905 357 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 ARL14EPLP0DKL9 152 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 KITLGP21583 273 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 LINC00310P59036 64 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 OR1C1Q15619 314 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 GALMQ96C23 342 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 RTL8AQ9BWD3 113 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 KCNIP1Q9NZI2 227 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 BOKQ9UMX3 212 aaPredicted RBP18.68■□□□□ 0.58
TRIM28-202ENST00000341753 LINC00473A8K010 186 aa18.67■□□□□ 0.58
TRIM28-202ENST00000341753 C15orf62A8K5M9 175 aa18.67■□□□□ 0.58
TRIM28-202ENST00000341753 CELA3BP08861 270 aa18.67■□□□□ 0.58
TRIM28-202ENST00000341753 MDP1Q86V88 176 aa18.67■□□□□ 0.58
TRIM28-202ENST00000341753 RFESDQ8TAC1 157 aa18.67■□□□□ 0.58
TRIM28-202ENST00000341753 MRGPRDQ8TDS7 321 aa18.67■□□□□ 0.58
TRIM28-202ENST00000341753 TMEM106BQ9NUM4 274 aa18.67■□□□□ 0.58
TRIM28-202ENST00000341753 WIPI2Q9Y4P8 454 aa18.67■□□□□ 0.58
TRIM28-202ENST00000341753 SH2D1BO14796 132 aa18.67■□□□□ 0.58
TRIM28-202ENST00000341753 TMPRSS2O15393 492 aa18.67■□□□□ 0.58
TRIM28-202ENST00000341753 TGFBR3Q03167 851 aa18.67■□□□□ 0.58
TRIM28-202ENST00000341753 LTC4SQ16873 150 aa18.67■□□□□ 0.58
TRIM28-202ENST00000341753 HSPB9Q9BQS6 159 aa18.67■□□□□ 0.58
TRIM28-202ENST00000341753 RYDENQ9NUL5 291 aaKnown RBP18.67■□□□□ 0.58
TRIM28-202ENST00000341753 DSPP15924 2871 aaKnown RBP18.67■□□□□ 0.58
TRIM28-202ENST00000341753 SERF1AO75920 110 aa18.66■□□□□ 0.58
TRIM28-202ENST00000341753 HBZP02008 142 aa18.66■□□□□ 0.58
TRIM28-202ENST00000341753 FOXL1Q12952 345 aa18.66■□□□□ 0.58
TRIM28-202ENST00000341753 HLA-DRB5Q30154 266 aa18.66■□□□□ 0.58
TRIM28-202ENST00000341753 ZNF826PQ6ZT77 177 aa18.66■□□□□ 0.58
TRIM28-202ENST00000341753 OCC1Q8TAD7 63 aa18.66■□□□□ 0.58
TRIM28-202ENST00000341753 OR2J1Q9GZK6 312 aa18.66■□□□□ 0.58
TRIM28-202ENST00000341753 CD1BP29016 333 aa18.66■□□□□ 0.58
TRIM28-202ENST00000341753 VWC2Q2TAL6 325 aa18.66■□□□□ 0.58
TRIM28-202ENST00000341753 VN1R17PQ8TDU5 208 aa18.66■□□□□ 0.58
TRIM28-202ENST00000341753 TTTY12Q9BZ98 90 aa18.66■□□□□ 0.58
TRIM28-202ENST00000341753 HAND1O96004 215 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 SP9P0CG40 484 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 ERVK11-1P61568 191 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 CATR1Q13166 79 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 DCAF10Q5QP82 559 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 KCNIP2Q9NS61 270 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 RRHO14718 337 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 RPLP1P05386 114 aaKnown RBP18.65■□□□□ 0.58
TRIM28-202ENST00000341753 CD59P13987 128 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 CD99P14209 185 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 ZNF90Q03938 601 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 FAM173AQ9BQD7 235 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 FAM234AQ9H0X4 552 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 LAMA5O15230 3695 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 TTC28Q96AY4 2481 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 BOD1L1Q8NFC6 3051 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 CLDN14O95500 239 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 SSTR5P35346 364 aa18.65■□□□□ 0.58
TRIM28-202ENST00000341753 EIF4EBP1Q13541 118 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-202ENST00000341753 TPTE2P1Q5T6R2 138 aa18.64■□□□□ 0.57
TRIM28-202ENST00000341753 MIC13Q5XKP0 118 aa18.64■□□□□ 0.57
TRIM28-202ENST00000341753 TMEM251Q8N6I4 163 aa18.64■□□□□ 0.57
TRIM28-202ENST00000341753 NINJ1Q92982 152 aa18.64■□□□□ 0.57
TRIM28-202ENST00000341753 WDR83OSQ9Y284 106 aa18.64■□□□□ 0.57
TRIM28-202ENST00000341753 AQP7O14520 342 aa18.64■□□□□ 0.57
TRIM28-202ENST00000341753 CDX4O14627 284 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-202ENST00000341753 YPEL1O60688 119 aa18.64■□□□□ 0.57
TRIM28-202ENST00000341753 OR9G9P0C7N8 305 aa18.64■□□□□ 0.57
TRIM28-202ENST00000341753 GABRA2P47869 451 aa18.64■□□□□ 0.57
TRIM28-202ENST00000341753 PLGLB1Q02325 96 aa18.64■□□□□ 0.57
TRIM28-202ENST00000341753 OR10G8Q8NGN5 311 aa18.64■□□□□ 0.57
TRIM28-202ENST00000341753 CIB3Q96Q77 187 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-202ENST00000341753 YPEL2Q96QA6 119 aa18.64■□□□□ 0.57
TRIM28-202ENST00000341753 MARCH11A6NNE9 402 aa18.63■□□□□ 0.57
TRIM28-202ENST00000341753 TIMP3P35625 211 aa18.63■□□□□ 0.57
TRIM28-202ENST00000341753 Q6ZR03 302 aa18.63■□□□□ 0.57
TRIM28-202ENST00000341753 R3HDM4Q96D70 268 aa18.63■□□□□ 0.57
TRIM28-202ENST00000341753 RBM14Q96PK6 669 aaKnown RBP18.63■□□□□ 0.57
TRIM28-202ENST00000341753 DIRC2Q96SL1 478 aa18.63■□□□□ 0.57
TRIM28-202ENST00000341753 MRPL18Q9H0U6 180 aaKnown RBP18.63■□□□□ 0.57
TRIM28-202ENST00000341753 PSG11Q9UQ72 335 aa18.63■□□□□ 0.57
TRIM28-202ENST00000341753 POLDIP2Q9Y2S7 368 aa18.63■□□□□ 0.57
TRIM28-202ENST00000341753 GOLT1BQ9Y3E0 138 aa18.63■□□□□ 0.57
TRIM28-202ENST00000341753 TMEM30CPA0ZSE6 113 aa18.63■□□□□ 0.57
TRIM28-202ENST00000341753 RAB29O14966 203 aa18.63■□□□□ 0.57
TRIM28-202ENST00000341753 DLEU1O43261 78 aa18.63■□□□□ 0.57
TRIM28-202ENST00000341753 VKORC1L1Q8N0U8 176 aa18.63■□□□□ 0.57
TRIM28-202ENST00000341753 SSMEM1Q8WWF3 244 aa18.63■□□□□ 0.57
TRIM28-202ENST00000341753 FAM103A1Q9BTL3 118 aaKnown RBP18.63■□□□□ 0.57
TRIM28-202ENST00000341753 YTHDF2Q9Y5A9 579 aaKnown RBP18.63■□□□□ 0.57
TRIM28-202ENST00000341753 EP300Q09472 2414 aaPredicted RBP18.63■□□□□ 0.57
TRIM28-202ENST00000341753 SPINK4O60575 86 aa18.62■□□□□ 0.57
TRIM28-202ENST00000341753 CRISP2P16562 243 aa18.62■□□□□ 0.57
TRIM28-202ENST00000341753 TPPP2P59282 170 aa18.62■□□□□ 0.57
TRIM28-202ENST00000341753 ZNF146Q15072 292 aa18.62■□□□□ 0.57
TRIM28-202ENST00000341753 RNF114Q9Y508 228 aa18.62■□□□□ 0.57
TRIM28-202ENST00000341753 TNFSF10P50591 281 aa18.62■□□□□ 0.57
TRIM28-202ENST00000341753 DCTN5Q9BTE1 182 aa18.62■□□□□ 0.57
TRIM28-202ENST00000341753 MRPS18CQ9Y3D5 142 aaKnown RBP18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms