RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 SPNS3Q6ZMD2 512 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 PKDREJQ9NTG1 2253 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 A0A1W2PS18 150 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 OR2J3O76001 311 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 KLK2P20151 261 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 CTSSP25774 331 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 SRSF4Q08170 494 aaKnown RBP8.82□□□□□ -1
CCDC88A-202ENST00000336838 RBPMS2Q6ZRY4 209 aaKnown RBP8.82□□□□□ -1
CCDC88A-202ENST00000336838 TMEM186Q96B77 213 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 FBXO17Q96EF6 278 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 FMC1Q96HJ9 113 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 ELOVL1Q9BW60 279 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 TMEM140Q9NV12 185 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 MED19A0JLT2 244 aaPredicted RBP8.82□□□□□ -1
CCDC88A-202ENST00000336838 SMIM12Q96EX1 92 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 DLL3Q9NYJ7 618 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 IL36RNQ9UBH0 155 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 TGIF2-C20orf24A0A0A6YYL0 155 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 IGHV3-43A0A0B4J1X8 118 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 C17orf51A8MQB3 221 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 IGHV3-43DP0DP04 118 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 HOXA4Q00056 320 aaPredicted RBP8.82□□□□□ -1
CCDC88A-202ENST00000336838 RUNX1Q01196 453 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 C1QTNF5Q9BXJ0 243 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 DMRTC1Q5HYR2 192 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 C9orf50Q5SZB4 431 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 KCNS1Q96KK3 526 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 WFDC6Q9BQY6 131 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 PLA2G3Q9NZ20 509 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 CCL2P13500 99 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 PDCD1Q15116 288 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 ZNF818PQ6ZRF7 136 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 CCL17Q92583 94 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 GPR146Q96CH1 333 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 H0YL77 283 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 CDX4O14627 284 aaPredicted RBP8.81□□□□□ -1
CCDC88A-202ENST00000336838 SCTP09683 121 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 LINC00869P0C866 280 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 SRSF9Q13242 221 aaKnown RBP eCLIP8.81□□□□□ -1
CCDC88A-202ENST00000336838 SAPCD1Q5SSQ6 148 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 C4orf51C9J302 202 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 SPINK4O60575 86 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 CEBPDP49716 269 aaPredicted RBP8.81□□□□□ -1
CCDC88A-202ENST00000336838 ZNF362Q5T0B9 420 aaPredicted RBP8.81□□□□□ -1
CCDC88A-202ENST00000336838 RASL11AQ6T310 242 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 GUCD1Q96NT3 240 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 AMELYQ99218 206 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 MAP1LC3AQ9H492 121 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 SOD3P08294 240 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 LINC00271P0C7V0 271 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 IL11P20809 199 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 OSR1Q8TAX0 266 aaPredicted RBP8.81□□□□□ -1
CCDC88A-202ENST00000336838 C16orf97H3BN30 126 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 RBFOX2O43251 390 aaKnown RBP eCLIP8.81□□□□□ -12e-7■■■■■ 40.6
CCDC88A-202ENST00000336838 COX6CP09669 75 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 HOXA5P20719 270 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 FAM89BQ8N5H3 189 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 SH2D7A6NKC9 451 aaPredicted RBP8.81□□□□□ -1
CCDC88A-202ENST00000336838 THY1P04216 161 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 SYT8Q8NBV8 401 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 RTBDNQ9BSG5 229 aaPredicted RBP8.81□□□□□ -1
CCDC88A-202ENST00000336838 EP300Q09472 2414 aaPredicted RBP8.81□□□□□ -1
CCDC88A-202ENST00000336838 C19orf67A6NJJ6 358 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 SIAH2O43255 324 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 PPIHO43447 177 aaKnown RBP8.81□□□□□ -1
CCDC88A-202ENST00000336838 TRGC1P0CF51 173 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 SFTPCP11686 197 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 TMEM11P17152 192 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 HSPB7Q9UBY9 170 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 IGHV3-64DA0A0J9YX35 117 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 TMEM189A5PLL7 270 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 RPL24P83731 157 aaKnown RBP8.81□□□□□ -1
CCDC88A-202ENST00000336838 TRIP6Q15654 476 aaKnown RBP8.81□□□□□ -1
CCDC88A-202ENST00000336838 SH3BGRL3Q9H299 93 aa8.81□□□□□ -1
CCDC88A-202ENST00000336838 PLCE1Q9P212 2302 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 SHISA7A6NL88 538 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 SYNGR3O43761 229 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 SPINK9Q5DT21 86 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 RNASEH2CQ8TDP1 164 aaKnown RBP8.8□□□□□ -1
CCDC88A-202ENST00000336838 METTL26Q96S19 204 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 C18orf12Q96KH6 178 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 RPP25Q9BUL9 199 aaKnown RBP8.8□□□□□ -1
CCDC88A-202ENST00000336838 CADP27708 2225 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 F2RL2O00254 374 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 CD5P06127 495 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 CXorf66Q5JRM2 361 aaPredicted RBP8.8□□□□□ -1
CCDC88A-202ENST00000336838 DOPEY2Q9Y3R5 2298 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 hCG_38984A0A1B0GV85 526 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 C1QL1O75973 258 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 SRP19P09132 144 aaKnown RBP8.8□□□□□ -1
CCDC88A-202ENST00000336838 HCFC1P51610 2035 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 TCL1AP56279 114 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 OR8A1Q8NGG7 326 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 IL36BQ9NZH7 164 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 UCNP55089 124 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.8□□□□□ -11e-9■■■■□ 23
CCDC88A-202ENST00000336838 LINC01549A6NIU2 74 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 ZNF883P0CG24 379 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 SOX8P57073 446 aa8.8□□□□□ -1
CCDC88A-202ENST00000336838 C16orf47Q6ZP98 133 aaPredicted RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms