RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 PRR36Q9H6K5 1346 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 A0A0J9YY10 115 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 A0A1B0GX78 115 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 HOXD4P09016 255 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 TSPOP30536 169 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 CEACAM8P31997 349 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 GNG3P63215 75 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 BCL6BQ8N143 479 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 COL5A2P05997 1499 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 FAM72CH0Y354 149 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 POLR2IP36954 125 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 RPS27P42677 84 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 FAM72AQ5TYM5 149 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 FAM72DQ6L9T8 149 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 C22orf39Q6P5X5 142 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 WDR82Q6UXN9 313 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 FAM72BQ86X60 149 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 STPG2Q8N412 459 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 OTORQ9NRC9 128 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 SIGLEC8Q9NYZ4 499 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 SIGLEC7Q9Y286 467 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 ATRNL1Q5VV63 1379 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 HSD52Q0P140 79 aa6.59□□□□□ -1.36
LIMCH1-201ENST00000313860 MESTQ5EB52 335 aa6.59□□□□□ -1.36
LIMCH1-201ENST00000313860 LINC01587Q99440 93 aa6.59□□□□□ -1.36
LIMCH1-201ENST00000313860 SF3B6Q9Y3B4 125 aaKnown RBP6.59□□□□□ -1.36
LIMCH1-201ENST00000313860 KAT6AQ92794 2004 aa6.59□□□□□ -1.36
LIMCH1-201ENST00000313860 IGHV4-61A0A0C4DH41 118 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 H0YL77 283 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 TNFSF13O75888 250 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 CEACAM5P06731 702 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 ZNF865P0CJ78 1059 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 CGB3P0DN86 165 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 REG1BP48304 166 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 LILRA4P59901 499 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 EWSR1Q01844 656 aaKnown RBP eCLIP6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 FBXW9Q5XUX1 488 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 LRTM2Q8N967 370 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 IGFBPL1Q8WX77 278 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 ALKBH3Q96Q83 286 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 METP08581 1390 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 C1orf167Q5SNV9 1468 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 CDKN3Q16667 212 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 REPIN1Q9BWE0 567 aaKnown RBP6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 SCNM1Q9BWG6 230 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 ST20Q9HBF5 79 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 PLA2G3Q9NZ20 509 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 PEMTQ9UBM1 199 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 LAMTOR5O43504 91 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 HCRTO43612 131 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 TYROBPO43914 113 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 HLA-DQB1P01920 261 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 PF4P02776 101 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 THY1P04216 161 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 REG1AP05451 166 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 BCL2P10415 239 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 TMEM171Q8WVE6 324 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 CHCHD5Q9BSY4 110 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 COLQQ9Y215 455 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 MYH4Q9Y623 1939 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 A0A1B0GX51 115 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 A8MXK9 166 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 IGHV1-8P0DP01 117 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 CT83Q5H943 113 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 C19orf24Q9BVV8 132 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 IL20Q9NYY1 176 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 ZNF346Q9UL40 294 aaKnown RBP6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 A0A087X0K7 114 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 PTP4A3O75365 173 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 PPBPP02775 128 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 RUNX1Q01196 453 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 CDK5R1Q15078 307 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 C3orf36Q3SXR2 165 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 PSMG4Q5JS54 123 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 DMRTC2Q8IXT2 367 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 ZNF740Q8NDX6 193 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 ARHGAP5-AS1Q96IT6 56 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 EGLN2Q96KS0 407 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 DEFB118Q96PH6 123 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 FAM110AQ9BQ89 295 aa6.58□□□□□ -1.36
LIMCH1-201ENST00000313860 TOPAZ1Q8N9V7 1692 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 ZIC3O60481 467 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 NGFRP08138 427 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 KLF9Q13886 244 aaPredicted RBP6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 MMD2Q8IY49 270 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 HS3ST3B1Q9Y662 390 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 IGHV4-30-2A0A087WSY4 118 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 A0A0U1RQS6 177 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 ZIC1Q15915 447 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 FBXL22Q6P050 247 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 ORMDL3Q8N138 153 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 THAP8Q8NA92 274 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 Q96M85 177 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 SPANXCQ9NY87 97 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 C2CD4BA6NLJ0 364 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 C1QL1O75973 258 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 C1QTNF4Q9BXJ3 329 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 VSIRQ9H7M9 311 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 SLC25A37Q9NYZ2 338 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 IGHV3OR16-13A0A075B7E8 117 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms