RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 DNAJC4Q9NNZ3 241 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 TMEM106BQ9NUM4 274 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 PRSS1P07477 247 aa16.42■□□□□ 0.22
USP48-201ENST00000308271 ZNF441Q8N8Z8 693 aa16.42■□□□□ 0.22
USP48-201ENST00000308271 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.42■□□□□ 0.22
USP48-201ENST00000308271 GAGE10A6NGK3 116 aa16.42■□□□□ 0.22
USP48-201ENST00000308271 MPV17P39210 176 aa16.42■□□□□ 0.22
USP48-201ENST00000308271 SSX8Q7RTT4 187 aa16.42■□□□□ 0.22
USP48-201ENST00000308271 RBM14Q96PK6 669 aaKnown RBP16.42■□□□□ 0.22
USP48-201ENST00000308271 RNF7Q9UBF6 113 aa16.42■□□□□ 0.22
USP48-201ENST00000308271 K7ESF4 209 aa16.42■□□□□ 0.22
USP48-201ENST00000308271 TTTY12Q9BZ98 90 aa16.42■□□□□ 0.22
USP48-201ENST00000308271 LINC00869P0C866 280 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 TNFSF10P50591 281 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 CENPWQ5EE01 88 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 C5orf17Q8NAS9 161 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 C1QTNF5Q9BXJ0 243 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 TBL2Q9Y4P3 447 aaKnown RBP16.41■□□□□ 0.22
USP48-201ENST00000308271 GTF3AQ92664 365 aaKnown RBP16.41■□□□□ 0.22
USP48-201ENST00000308271 COL25A1Q9BXS0 654 aaPredicted RBP16.41■□□□□ 0.22
USP48-201ENST00000308271 RALGAPA1Q6GYQ0 2036 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 TFF3Q07654 80 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 C1orf174Q8IYL3 243 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 FADS6Q8N9I5 356 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 IMMP2LQ96T52 175 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 REPIN1Q9BWE0 567 aaKnown RBP16.41■□□□□ 0.22
USP48-201ENST00000308271 FSCN3Q9NQT6 498 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 SDK2Q58EX2 2172 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 TNXAQ16473 311 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 ABHD12Q8N2K0 398 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 C14orf144Q96I85 54 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 LINC00470Q9BZP3 86 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 CLEC1BQ9P126 229 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 ZFP30Q9Y2G7 519 aa16.41■□□□□ 0.22
USP48-201ENST00000308271 PTGDSP41222 190 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 ATP5G3P48201 142 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 C2orf88Q9BSF0 95 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 NRN1LQ496H8 165 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 STPG3Q8N7X2 389 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 OR8A1Q8NGG7 326 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 RPEQ96AT9 228 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 COX6A1P12074 109 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 ACP1P24666 158 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 MAS1LP35410 378 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 ZNF826PQ6ZT77 177 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 IGLV3-32A0A0A0MS00 114 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 C21orf140B9A014 251 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 AGFG2O95081 481 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 CEBPDP49716 269 aaPredicted RBP16.4■□□□□ 0.22
USP48-201ENST00000308271 PLAURQ03405 335 aa16.4■□□□□ 0.22
USP48-201ENST00000308271 SLC35E4Q6ICL7 350 aa16.39■□□□□ 0.21
USP48-201ENST00000308271 ATOH7Q8N100 152 aa16.39■□□□□ 0.21
USP48-201ENST00000308271 SHISA5Q8N114 240 aa16.39■□□□□ 0.21
USP48-201ENST00000308271 GCSAMQ8N6F7 178 aa16.39■□□□□ 0.21
USP48-201ENST00000308271 ZNF837Q96EG3 531 aaPredicted RBP16.39■□□□□ 0.21
USP48-201ENST00000308271 NABP2Q9BQ15 211 aa16.39■□□□□ 0.21
USP48-201ENST00000308271 AMMECR1Q9Y4X0 333 aaPredicted RBP16.39■□□□□ 0.21
USP48-201ENST00000308271 J3QW42 95 aa16.39■□□□□ 0.21
USP48-201ENST00000308271 SLC17A3O00476 420 aa16.39■□□□□ 0.21
USP48-201ENST00000308271 ZNF207O43670 478 aaKnown RBP16.39■□□□□ 0.21
USP48-201ENST00000308271 NUTF2P61970 127 aaKnown RBP16.39■□□□□ 0.21
USP48-201ENST00000308271 JPT1Q9UK76 154 aa16.39■□□□□ 0.21
USP48-201ENST00000308271 TMPRSS2O15393 492 aa16.39■□□□□ 0.21
USP48-201ENST00000308271 MT-CO3P00414 261 aa16.39■□□□□ 0.21
USP48-201ENST00000308271 SNRPCP09234 159 aaKnown RBP16.39■□□□□ 0.21
USP48-201ENST00000308271 ZDHHC16Q969W1 377 aa16.39■□□□□ 0.21
USP48-201ENST00000308271 SVILO95425 2214 aa16.39■□□□□ 0.21
USP48-201ENST00000308271 ZNF785A8K8V0 405 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 BTF3P20290 206 aaKnown RBP16.38■□□□□ 0.21
USP48-201ENST00000308271 KLF2Q9Y5W3 355 aaPredicted RBP16.38■□□□□ 0.21
USP48-201ENST00000308271 SERF1AO75920 110 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 PRRX1P54821 245 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 KLHDC3Q9BQ90 382 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 B4E171 279 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 HYPMO75409 117 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 OR2J3O76001 311 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 TIAF1O95411 115 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 TSPAN7P41732 249 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 BHLHA15Q7RTS1 189 aaPredicted RBP16.38■□□□□ 0.21
USP48-201ENST00000308271 ARRDC1-AS1Q9H2J1 176 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 DNAJC13O75165 2243 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 CA2P00918 260 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 DCAF10Q5QP82 559 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 DOLPP1Q86YN1 238 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 NLRC5Q86WI3 1866 aa16.38■□□□□ 0.21
USP48-201ENST00000308271 ZIC3O60481 467 aa16.37■□□□□ 0.21
USP48-201ENST00000308271 CA7P43166 264 aa16.37■□□□□ 0.21
USP48-201ENST00000308271 GBGT1Q8N5D6 347 aa16.37■□□□□ 0.21
USP48-201ENST00000308271 SCO2A0A1W2PP80 73 aa16.37■□□□□ 0.21
USP48-201ENST00000308271 IL6RP08887 468 aaPredicted RBP16.37■□□□□ 0.21
USP48-201ENST00000308271 ATP5IP56385 69 aaPredicted RBP16.37■□□□□ 0.21
USP48-201ENST00000308271 IGHV3OR15-7A0A075B7D8 119 aa16.37■□□□□ 0.21
USP48-201ENST00000308271 IGHV2-70P01814 119 aa16.37■□□□□ 0.21
USP48-201ENST00000308271 LYRM7Q5U5X0 104 aa16.37■□□□□ 0.21
USP48-201ENST00000308271 OR8B3Q8NGG8 313 aa16.37■□□□□ 0.21
USP48-201ENST00000308271 GATAD1Q8WUU5 269 aa16.37■□□□□ 0.21
USP48-201ENST00000308271 HLA-DRB1P01911 266 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 RPL11P62913 178 aaKnown RBP16.36■□□□□ 0.21
USP48-201ENST00000308271 RELBQ01201 579 aa16.36■□□□□ 0.21
USP48-201ENST00000308271 DEFB109BQ30KR1 87 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms