RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 FAM214BQ7L5A3 538 aa10.96□□□□□ -0.66
COL3A1-201ENST00000304636 SPRED2Q7Z698 418 aa10.96□□□□□ -0.66
COL3A1-201ENST00000304636 TMEM170AQ8WVE7 144 aa10.96□□□□□ -0.66
COL3A1-201ENST00000304636 MIEN1Q9BRT3 115 aa10.96□□□□□ -0.66
COL3A1-201ENST00000304636 TMEM70Q9BUB7 260 aa10.96□□□□□ -0.66
COL3A1-201ENST00000304636 HES7Q9BYE0 225 aa10.96□□□□□ -0.66
COL3A1-201ENST00000304636 PLAUP00749 431 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 OTX1P32242 354 aaPredicted RBP10.95□□□□□ -0.66
COL3A1-201ENST00000304636 DNLZQ5SXM8 178 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 ZNF841Q6ZN19 808 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 ERASQ7Z444 233 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 PEF1Q9UBV8 284 aaKnown RBP10.95□□□□□ -0.66
COL3A1-201ENST00000304636 hCG_38984A0A1B0GV85 526 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 ZNHIT1O43257 154 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 CYB5R2Q6BCY4 276 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 HEPN1Q6WQI6 88 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 MUC15Q8N387 334 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 CCL13Q99616 98 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 TBL2Q9Y4P3 447 aaKnown RBP10.95□□□□□ -0.66
COL3A1-201ENST00000304636 HIST1H2BKO60814 126 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 HIST1H2BJP06899 126 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 HIST1H2BOP23527 126 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 HIST1H2BBP33778 126 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 RND2P52198 227 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 HIST1H2BDP58876 126 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 HIST1H2BCP62807 126 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 HIST2H2BEQ16778 126 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.95□□□□□ -0.66
COL3A1-201ENST00000304636 HIST1H2BHQ93079 126 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 DIRC2Q96SL1 478 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 HIST1H2BNQ99877 126 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 HIST1H2BMQ99879 126 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 GCSHP23434 173 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 OR51G1Q8NGK1 321 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 GATAD1Q8WUU5 269 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 IDI2-AS1Q9NZ38 188 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 BRWD1Q9NSI6 2320 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 J3QW42 95 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 LIPFP07098 398 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 IL6RP08887 468 aaPredicted RBP10.95□□□□□ -0.66
COL3A1-201ENST00000304636 ERVFRD-1P60508 538 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 HBBP68871 147 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 DGAT2L7PQ6IED9 249 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 ZNF525Q8N782 197 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 RAB37Q96AX2 223 aa10.95□□□□□ -0.66
COL3A1-201ENST00000304636 PRR32B1ATL7 298 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 RPS20P60866 119 aaKnown RBP10.94□□□□□ -0.66
COL3A1-201ENST00000304636 RPL23P62829 140 aaKnown RBP10.94□□□□□ -0.66
COL3A1-201ENST00000304636 P2RY6Q15077 328 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 TMUB1Q9BVT8 246 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 RALGAPA2Q2PPJ7 1873 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 PIKFYVEQ9Y2I7 2098 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 SYNGR3O43761 229 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 MAP1LC3AQ9H492 121 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 A0A1W2PRD5 423 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 A0A1W2PRF3 423 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 A0A1W2PRM7 423 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 TGFBR3LH3BV60 316 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 M0R3E3 92 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 DEFB123Q8N688 67 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 TMEM30BQ3MIR4 351 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 KCNS1Q96KK3 526 aa10.94□□□□□ -0.66
COL3A1-201ENST00000304636 IGKV3D-11A0A0A0MRZ8 115 aa10.93□□□□□ -0.66
COL3A1-201ENST00000304636 KRTCAP3Q53RY4 240 aa10.93□□□□□ -0.66
COL3A1-201ENST00000304636 TRIP6Q15654 476 aaKnown RBP10.93□□□□□ -0.66
COL3A1-201ENST00000304636 TMEM136Q6ZRR5 245 aa10.93□□□□□ -0.66
COL3A1-201ENST00000304636 RBPMS2Q6ZRY4 209 aaKnown RBP10.93□□□□□ -0.66
COL3A1-201ENST00000304636 C1QL4Q86Z23 238 aa10.93□□□□□ -0.66
COL3A1-201ENST00000304636 SMOC1Q9H4F8 434 aa10.93□□□□□ -0.66
COL3A1-201ENST00000304636 HS3ST3B1Q9Y662 390 aa10.93□□□□□ -0.66
COL3A1-201ENST00000304636 A0A087WV48 116 aa10.93□□□□□ -0.66
COL3A1-201ENST00000304636 SRSF12Q8WXF0 261 aaKnown RBP10.93□□□□□ -0.66
COL3A1-201ENST00000304636 ZDHHC16Q969W1 377 aa10.93□□□□□ -0.66
COL3A1-201ENST00000304636 WNT10AQ9GZT5 417 aa10.93□□□□□ -0.66
COL3A1-201ENST00000304636 WBP1LQ9NX94 342 aa10.93□□□□□ -0.66
COL3A1-201ENST00000304636 COX6A1P12074 109 aa10.93□□□□□ -0.66
COL3A1-201ENST00000304636 JOSD1Q15040 202 aaPredicted RBP10.93□□□□□ -0.66
COL3A1-201ENST00000304636 HCP5Q6MZN7 132 aa10.93□□□□□ -0.66
COL3A1-201ENST00000304636 IMMP2LQ96T52 175 aa10.93□□□□□ -0.66
COL3A1-201ENST00000304636 SSBP3Q9BWW4 388 aaPredicted RBP10.93□□□□□ -0.66
COL3A1-201ENST00000304636 TFF3Q07654 80 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 CCDC144NLQ6NUI1 221 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 SLC25A45Q8N413 288 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 FAM89BQ8N5H3 189 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 LINC00470Q9BZP3 86 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 AKIRIN1Q9H9L7 192 aaPredicted RBP10.92□□□□□ -0.66
COL3A1-201ENST00000304636 A0A0G2JMZ2 1700 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 LRRC37A2A6NM11 1700 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 POLR2AP24928 1970 aaKnown RBP10.92□□□□□ -0.66
COL3A1-201ENST00000304636 J3KRW8 73 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 SLC17A3O00476 420 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 RRHO14718 337 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 GPX4P36969 197 aaPredicted RBP10.92□□□□□ -0.66
COL3A1-201ENST00000304636 PCOLCEQ15113 449 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 KLF14Q8TD94 323 aaPredicted RBP10.92□□□□□ -0.66
COL3A1-201ENST00000304636 PAQR4Q8N4S7 273 aaPredicted RBP10.92□□□□□ -0.66
COL3A1-201ENST00000304636 WDR31Q8NA23 367 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 OR1N2Q8NGR9 330 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 OR4A5Q8NH83 315 aa10.92□□□□□ -0.66
COL3A1-201ENST00000304636 ZNF502Q8TBZ5 544 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms