RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CHCHD2Q9Y6H1 151 aaPredicted RBP11.29□□□□□ -0.6
SKA3-201ENST00000298260 HEATR1Q9H583 2144 aaKnown RBP11.28□□□□□ -0.6
SKA3-201ENST00000298260 IGHV1OR21-1A0A087WYE8 117 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 OR2T8A6NH00 312 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 A8MXE2 369 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 PLPPR2Q96GM1 343 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 ZFHX4Q86UP3 3567 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 A0A1W2PPC4 97 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 TFF1P04155 84 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 CTXN2P0C2S0 81 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 Q0VG73 95 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 TRIP6Q15654 476 aaKnown RBP11.28□□□□□ -0.6
SKA3-201ENST00000298260 MPV17L2Q567V2 206 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 WDR74Q6RFH5 385 aaPredicted RBP11.28□□□□□ -0.6
SKA3-201ENST00000298260 SPATA12Q7Z6I5 190 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 YRDCQ86U90 279 aaKnown RBP11.28□□□□□ -0.6
SKA3-201ENST00000298260 MKXQ8IYA7 352 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 FOXB1Q99853 325 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 DEFB126Q9BYW3 111 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 KCNIP2Q9NS61 270 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 DLL3Q9NYJ7 618 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 CACNA1HO95180 2353 aa11.28□□□□□ -0.6
SKA3-201ENST00000298260 C17orf98A8MV24 154 aa11.27□□□□□ -0.6
SKA3-201ENST00000298260 ZNF324O75467 553 aaPredicted RBP11.27□□□□□ -0.6
SKA3-201ENST00000298260 IGLL1P15814 213 aa11.27□□□□□ -0.6
SKA3-201ENST00000298260 TNFSF4P23510 183 aa11.27□□□□□ -0.6
SKA3-201ENST00000298260 RIPPLY3P57055 190 aa11.27□□□□□ -0.6
SKA3-201ENST00000298260 ZNF596Q8TC21 504 aa11.27□□□□□ -0.6
SKA3-201ENST00000298260 C5orf30Q96GV9 206 aa11.27□□□□□ -0.6
SKA3-201ENST00000298260 KCNS1Q96KK3 526 aa11.27□□□□□ -0.6
SKA3-201ENST00000298260 CST9LQ9H4G1 147 aa11.27□□□□□ -0.6
SKA3-201ENST00000298260 SLC35D1Q9NTN3 355 aa11.27□□□□□ -0.6
SKA3-201ENST00000298260 CUL9Q8IWT3 2517 aa11.27□□□□□ -0.6
SKA3-201ENST00000298260 DCHS1Q96JQ0 3298 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 DSPP15924 2871 aaKnown RBP11.27□□□□□ -0.61
SKA3-201ENST00000298260 PI4KAP42356 2102 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 ZIC3O60481 467 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 PRRX1P54821 245 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 FOXG1P55316 489 aaPredicted RBP11.27□□□□□ -0.61
SKA3-201ENST00000298260 TSKUQ8WUA8 353 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 HSPB7Q9UBY9 170 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 TRAPPC2LQ9UL33 140 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 C5orf49A4QMS7 147 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 ZFAND5O76080 213 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 CEBPDP49716 269 aaPredicted RBP11.27□□□□□ -0.61
SKA3-201ENST00000298260 RPEL1Q2QD12 228 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 CLEC2AQ6UVW9 174 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 NHLRC2Q8NBF2 726 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 OR4F17Q8NGA8 305 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 MCRIP2Q9BUT9 160 aaKnown RBP11.27□□□□□ -0.61
SKA3-201ENST00000298260 MMP17Q9ULZ9 603 aa11.27□□□□□ -0.61
SKA3-201ENST00000298260 LRRC30A6NM36 301 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 BMPR1BO00238 502 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 SRFP11831 508 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 BRWD1-AS2P59051 145 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 PMCHL1Q16048 86 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 OCIAD2Q56VL3 154 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 VASH2Q86V25 355 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 WFDC8Q8IUA0 241 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 FADS6Q8N9I5 356 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 RNF138Q8WVD3 245 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 FAM122AQ96E09 287 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 PRRG4Q9BZD6 226 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 STRADBQ9C0K7 418 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 OR2D2Q9H210 308 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 LIN7CQ9NUP9 197 aaKnown RBP11.26□□□□□ -0.61
SKA3-201ENST00000298260 A0A1W2PRS3 328 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 SH2D7A6NKC9 451 aaPredicted RBP11.26□□□□□ -0.61
SKA3-201ENST00000298260 CELA3BP08861 270 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 AAED1Q7RTV5 226 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 NUDT10Q8NFP7 164 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 SFXN3Q9BWM7 321 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 SEPSECSQ9HD40 501 aaKnown RBP11.26□□□□□ -0.61
SKA3-201ENST00000298260 V9GYV3 84 aa11.26□□□□□ -0.61
SKA3-201ENST00000298260 IGLV3-32A0A0A0MS00 114 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 IGLC7A0M8Q6 106 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 ZNF503-AS2A6NEH8 195 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 CXCL13O43927 109 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 STUMQ69YW2 141 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 EBLN2Q6P2I7 272 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 TCTEX1D1Q8N7M0 179 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 ABHD3Q8WU67 409 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 ZPBPQ9BS86 351 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 SSBP3Q9BWW4 388 aaPredicted RBP11.25□□□□□ -0.61
SKA3-201ENST00000298260 DEGS1O15121 323 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 GLB1P16278 677 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 CD1BP29016 333 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 GPR6P46095 362 aaPredicted RBP11.25□□□□□ -0.61
SKA3-201ENST00000298260 SPATA46Q5T0L3 261 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 AMMECR1LQ6DCA0 310 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 OR4A47Q6IF82 309 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 TMEM136Q6ZRR5 245 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 FAM58AQ8N1B3 248 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 BORCS7Q96B45 105 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 SERTAD4Q9NUC0 356 aa11.25□□□□□ -0.61
SKA3-201ENST00000298260 IGHV2-26A0A0B4J1V2 119 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 A0A1W2PN81 502 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 ZNF891A8MT65 544 aaPredicted RBP11.24□□□□□ -0.61
SKA3-201ENST00000298260 ACTL6BO94805 426 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 SELENOVP59797 346 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms