RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 CSN3P07498 182 aa9.71□□□□□ -0.86
CD44-203ENST00000278386 CD36P16671 472 aa9.71□□□□□ -0.86
CD44-203ENST00000278386 CDK10Q15131 360 aa9.71□□□□□ -0.86
CD44-203ENST00000278386 HAGHQ16775 308 aa9.71□□□□□ -0.86
CD44-203ENST00000278386 MRGPRG-AS1Q2M3A8 158 aa9.71□□□□□ -0.86
CD44-203ENST00000278386 C22orf42Q6IC83 251 aa9.71□□□□□ -0.86
CD44-203ENST00000278386 ZNF645Q8N7E2 425 aa9.71□□□□□ -0.86
CD44-203ENST00000278386 ZNF430Q9H8G1 570 aaPredicted RBP9.71□□□□□ -0.86
CD44-203ENST00000278386 EDA2RQ9HAV5 297 aa9.71□□□□□ -0.86
CD44-203ENST00000278386 PLEKHA3Q9HB20 300 aa9.71□□□□□ -0.86
CD44-203ENST00000278386 AKIP1Q9NQ31 210 aa9.71□□□□□ -0.86
CD44-203ENST00000278386 ELF5Q9UKW6 265 aaPredicted RBP9.71□□□□□ -0.86
CD44-203ENST00000278386 MRPS7Q9Y2R9 242 aaKnown RBP9.71□□□□□ -0.86
CD44-203ENST00000278386 PRELID3BQ9Y3B1 194 aa9.71□□□□□ -0.86
CD44-203ENST00000278386 TENM2Q9NT68 2774 aa9.71□□□□□ -0.86
CD44-203ENST00000278386 IGKV1D-8A0A087WSZ0 117 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 LCE6AA0A183 80 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 IZUMO1RA6ND01 250 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 BMPR1BO00238 502 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 FCGR3BO75015 233 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 DTYMKP23919 212 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 HSPA13P48723 471 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 CD81P60033 236 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 ATP5G2Q06055 141 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 ARL6IP1Q15041 203 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 C10orf55Q5SWW7 151 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 IZUMO2Q6UXV1 221 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 Q6ZS49 121 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 MMD2Q8IY49 270 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 SPIN2AQ99865 258 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 SPIN2BQ9BPZ2 258 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 SIGLEC8Q9NYZ4 499 aa9.7□□□□□ -0.86
CD44-203ENST00000278386 TRDV1A0A1B0GX56 115 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 DPPA5A6NC42 116 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 AIREO43918 545 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 OR2J3O76001 311 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 NFYAP23511 347 aaPredicted RBP9.69□□□□□ -0.86
CD44-203ENST00000278386 ZNF45Q02386 682 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 CDNFQ49AH0 187 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 ADAMTSL5Q6ZMM2 481 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 SLC25A42Q86VD7 318 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 OR2K2Q8NGT1 345 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 NUDCD2Q8WVJ2 157 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 TCTEX1D2Q8WW35 142 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 THAP7Q9BT49 309 aaPredicted RBP9.69□□□□□ -0.86
CD44-203ENST00000278386 ST6GALNAC5Q9BVH7 336 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 RETNQ9HD89 108 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 OR2W1Q9Y3N9 320 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 CEPT1Q9Y6K0 416 aa9.69□□□□□ -0.86
CD44-203ENST00000278386 TMEM235A6NFC5 223 aa9.68□□□□□ -0.86
CD44-203ENST00000278386 PPP5D1E7EU14 171 aa9.68□□□□□ -0.86
CD44-203ENST00000278386 ATP6V1G2O95670 118 aa9.68□□□□□ -0.86
CD44-203ENST00000278386 CTXN2P0C2S0 81 aa9.68□□□□□ -0.86
CD44-203ENST00000278386 GNG2P59768 71 aa9.68□□□□□ -0.86
CD44-203ENST00000278386 C15orf32Q32M92 178 aa9.68□□□□□ -0.86
CD44-203ENST00000278386 VKORC1L1Q8N0U8 176 aa9.68□□□□□ -0.86
CD44-203ENST00000278386 OR4S2Q8NH73 311 aa9.68□□□□□ -0.86
CD44-203ENST00000278386 FAM110AQ9BQ89 295 aa9.68□□□□□ -0.86
CD44-203ENST00000278386 SLC2A8Q9NY64 477 aa9.68□□□□□ -0.86
CD44-203ENST00000278386 RBMX2Q9Y388 322 aaKnown RBP9.68□□□□□ -0.86
CD44-203ENST00000278386 HYDINQ4G0P3 5121 aa9.68□□□□□ -0.86
CD44-203ENST00000278386 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.67□□□□□ -0.86
CD44-203ENST00000278386 TRBV9A0A0B4J1U6 114 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 HMX3A6NHT5 357 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 SLC22A5O76082 557 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 TPPPO94811 219 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 PSMB9P28065 219 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 RPL27AP46776 148 aaKnown RBP9.67□□□□□ -0.86
CD44-203ENST00000278386 RPL30P62888 115 aaKnown RBP9.67□□□□□ -0.86
CD44-203ENST00000278386 GUCA2BQ16661 112 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 CD300EQ496F6 205 aaPredicted RBP9.67□□□□□ -0.86
CD44-203ENST00000278386 HACD4Q5VWC8 232 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 C19orf35Q6ZS72 473 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 NR2C2APQ86WQ0 139 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 TTC9CQ8N5M4 171 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 NECAP1Q8NC96 275 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 VSTM2AQ8TAG5 236 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 FYTTD1Q96QD9 318 aaKnown RBP9.67□□□□□ -0.86
CD44-203ENST00000278386 NEURL2Q9BR09 285 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 SPATA2Q9UM82 520 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 ZNF257Q9Y2Q1 563 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 DNAH1Q9P2D7 4330 aa9.67□□□□□ -0.86
CD44-203ENST00000278386 EPPK1P58107 5090 aaKnown RBP9.66□□□□□ -0.86
CD44-203ENST00000278386 IGKV1D-13A0A0B4J2D9 117 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 NOTOA8MTQ0 251 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 SCGNO76038 276 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 KBTBD11O94819 623 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 IGHV3-23P01764 117 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 HLA-AP01891 365 aaKnown RBP9.66□□□□□ -0.86
CD44-203ENST00000278386 HLA-DQB1P01920 261 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 IGKV1-13P0DP09 117 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 GALP22466 123 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 GABARAPL2P60520 117 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 FAM209BQ5JX69 171 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 CNIH2Q6PI25 160 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 SSX9Q7RTT3 188 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 LAX1Q8IWV1 398 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 LGALS14Q8TCE9 139 aa9.66□□□□□ -0.86
CD44-203ENST00000278386 KCTD12Q96CX2 325 aaKnown RBP9.66□□□□□ -0.86
CD44-203ENST00000278386 OR2A7Q96R45 310 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms