RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 FABP1P07148 127 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 HIST1H2BOP23527 126 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 HIST1H2BBP33778 126 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 DLX1P56177 255 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 KLF3P57682 345 aaPredicted RBP13.79□□□□□ -0.2
VPS54-201ENST00000272322 HIST1H2BDP58876 126 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 HIST1H2BCP62807 126 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 MEF2BQ02080 365 aaPredicted RBP13.79□□□□□ -0.2
VPS54-201ENST00000272322 HIST2H2BEQ16778 126 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.79□□□□□ -0.2
VPS54-201ENST00000272322 MOB3BQ86TA1 216 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 Q8TCH9 128 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 HIST1H2BHQ93079 126 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 HIST1H2BNQ99877 126 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 HIST1H2BMQ99879 126 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 HES4Q9HCC6 221 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 VAX2Q9UIW0 290 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 FABP4P15090 132 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 COX5AP20674 150 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 FAM3BP58499 235 aaPredicted RBP13.79□□□□□ -0.2
VPS54-201ENST00000272322 PRSS8Q16651 343 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 C9orf152Q5JTZ5 239 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 MRPL37Q9BZE1 423 aaKnown RBP13.79□□□□□ -0.2
VPS54-201ENST00000272322 PLSCR4Q9NRQ2 329 aa13.79□□□□□ -0.2
VPS54-201ENST00000272322 NPIPB11E5RHQ5 1161 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 TMPRSS2O15393 492 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 TRGC1P0CF51 173 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 FOLR2P14207 255 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 DUTP33316 252 aaKnown RBP13.78□□□□□ -0.2
VPS54-201ENST00000272322 ATP5G3P48201 142 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 PSMB3P49720 205 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 MORN2Q502X0 79 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 S1PR3Q99500 378 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 SLC25A15Q9Y619 301 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 SPG11Q96JI7 2443 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 A0A1W2PPV4 95 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 UBE2CO00762 179 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 GATA2P23769 480 aaPredicted RBP13.78□□□□□ -0.2
VPS54-201ENST00000272322 C16orf82Q7Z2V1 217 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 ZNF251Q9BRH9 671 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 TMEM147Q9BVK8 224 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 PARLQ9H300 379 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 CISD2Q8N5K1 135 aaKnown RBP13.78□□□□□ -0.2
VPS54-201ENST00000272322 TUBA4BQ9H853 241 aa13.78□□□□□ -0.2
VPS54-201ENST00000272322 APELAP0DMC3 54 aa13.77□□□□□ -0.2
VPS54-201ENST00000272322 EIF2S3P41091 472 aaKnown RBP13.77□□□□□ -0.2
VPS54-201ENST00000272322 MRGPRGQ86SM5 289 aa13.77□□□□□ -0.2
VPS54-201ENST00000272322 TMEM37Q8WXS4 190 aa13.77□□□□□ -0.2
VPS54-201ENST00000272322 MEGF10Q96KG7 1140 aa13.77□□□□□ -0.2
VPS54-201ENST00000272322 GSN-AS1Q9NRJ2 163 aa13.77□□□□□ -0.2
VPS54-201ENST00000272322 FAM215AQ9Y5M1 114 aa13.77□□□□□ -0.2
VPS54-201ENST00000272322 C15orf65H3BRN8 121 aa13.77□□□□□ -0.21
VPS54-201ENST00000272322 SERF2P84101 59 aa13.77□□□□□ -0.21
VPS54-201ENST00000272322 MLANAQ16655 118 aa13.77□□□□□ -0.21
VPS54-201ENST00000272322 PDLIM3Q53GG5 364 aaPredicted RBP13.77□□□□□ -0.21
VPS54-201ENST00000272322 RHOVQ96L33 236 aa13.77□□□□□ -0.21
VPS54-201ENST00000272322 CISD1Q9NZ45 108 aaKnown RBP13.77□□□□□ -0.21
VPS54-201ENST00000272322 CLDN34H7C241 214 aa13.77□□□□□ -0.21
VPS54-201ENST00000272322 SOD3P08294 240 aa13.77□□□□□ -0.21
VPS54-201ENST00000272322 CD1BP29016 333 aa13.77□□□□□ -0.21
VPS54-201ENST00000272322 S100A2P29034 98 aa13.77□□□□□ -0.21
VPS54-201ENST00000272322 ABHD5Q8WTS1 349 aa13.77□□□□□ -0.21
VPS54-201ENST00000272322 SDF2L1Q9HCN8 221 aa13.77□□□□□ -0.21
VPS54-201ENST00000272322 C15orf62A8K5M9 175 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 LY86O95711 162 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 ERVK-16P61578 105 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 ASPHD1Q5U4P2 390 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 TOLLIPQ9H0E2 274 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 CALYQ9NYX4 217 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 OR6C3Q9NZP0 311 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 IFITM10A6NMD0 228 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 IFNA1P01562 189 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 IGHV2-5P01817 119 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 TNFAIP6P98066 277 aaPredicted RBP13.76□□□□□ -0.21
VPS54-201ENST00000272322 TMEM241Q24JQ0 296 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 PIP4P1Q86T03 277 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 PCGF1Q9BSM1 259 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 TMEM140Q9NV12 185 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 C11orf94C9JXX5 98 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 NDUFB4O95168 129 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 CDC34P49427 236 aaPredicted RBP13.76□□□□□ -0.21
VPS54-201ENST00000272322 FAM90A1Q86YD7 464 aa13.76□□□□□ -0.21
VPS54-201ENST00000272322 PINX1Q96BK5 328 aaKnown RBP13.76□□□□□ -0.21
VPS54-201ENST00000272322 AHRRA9YTQ3 701 aa13.75□□□□□ -0.21
VPS54-201ENST00000272322 BSXQ3C1V8 233 aa13.75□□□□□ -0.21
VPS54-201ENST00000272322 SLC35E3Q7Z769 313 aa13.75□□□□□ -0.21
VPS54-201ENST00000272322 C1orf87Q8N0U7 546 aa13.75□□□□□ -0.21
VPS54-201ENST00000272322 CCL17Q92583 94 aa13.75□□□□□ -0.21
VPS54-201ENST00000272322 ACTR3CQ9C0K3 210 aaPredicted RBP13.75□□□□□ -0.21
VPS54-201ENST00000272322 METTL1Q9UBP6 276 aaKnown RBP13.75□□□□□ -0.21
VPS54-201ENST00000272322 ARHGAP32A7KAX9 2087 aa13.75□□□□□ -0.21
VPS54-201ENST00000272322 SRRM5B3KS81 715 aa13.75□□□□□ -0.21
VPS54-201ENST00000272322 KITLGP21583 273 aa13.75□□□□□ -0.21
VPS54-201ENST00000272322 GUSBP1Q15486 140 aa13.75□□□□□ -0.21
VPS54-201ENST00000272322 CT45A1Q5HYN5 189 aa13.75□□□□□ -0.21
VPS54-201ENST00000272322 CT45A3Q8NHU0 189 aa13.75□□□□□ -0.21
VPS54-201ENST00000272322 MBD3L1Q8WWY6 194 aa13.75□□□□□ -0.21
VPS54-201ENST00000272322 MS4A5Q9H3V2 200 aa13.75□□□□□ -0.21
VPS54-201ENST00000272322 TET2Q6N021 2002 aaPredicted RBP13.75□□□□□ -0.21
VPS54-201ENST00000272322 CGAP01215 116 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms