RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 SPDYE2Q495Y8 402 aa12.83□□□□□ -0.36
SCN1A-222ENST00000642141 LDLRAD1Q5T700 205 aa12.83□□□□□ -0.36
SCN1A-222ENST00000642141 LPIN2Q92539 896 aa12.83□□□□□ -0.36
SCN1A-222ENST00000642141 TMEM39BQ9GZU3 492 aa12.83□□□□□ -0.36
SCN1A-222ENST00000642141 CEP126Q9P2H0 1117 aa12.83□□□□□ -0.36
SCN1A-222ENST00000642141 KIF16BQ96L93 1317 aa12.83□□□□□ -0.36
SCN1A-222ENST00000642141 PPP1R12BO60237 982 aaPredicted RBP12.82□□□□□ -0.36
SCN1A-222ENST00000642141 USP2O75604 605 aaPredicted RBP12.82□□□□□ -0.36
SCN1A-222ENST00000642141 TRIM27P14373 513 aa12.82□□□□□ -0.36
SCN1A-222ENST00000642141 ADORA1P30542 326 aa12.82□□□□□ -0.36
SCN1A-222ENST00000642141 ATP2B3Q16720 1220 aa12.82□□□□□ -0.36
SCN1A-222ENST00000642141 INTS3Q68E01 1043 aaKnown RBP12.82□□□□□ -0.36
SCN1A-222ENST00000642141 SAGE1Q9NXZ1 904 aa12.82□□□□□ -0.36
SCN1A-222ENST00000642141 SSC5DA1L4H1 1573 aa12.81□□□□□ -0.36
SCN1A-222ENST00000642141 IPO8O15397 1037 aaKnown RBP12.81□□□□□ -0.36
SCN1A-222ENST00000642141 SRGAP3O43295 1099 aa12.81□□□□□ -0.36
SCN1A-222ENST00000642141 TIMM10P62072 90 aa12.81□□□□□ -0.36
SCN1A-222ENST00000642141 SPRYD7Q5W111 196 aa12.81□□□□□ -0.36
SCN1A-222ENST00000642141 TBC1D22AQ8WUA7 517 aa12.81□□□□□ -0.36
SCN1A-222ENST00000642141 ARHGAP45Q92619 1136 aa12.81□□□□□ -0.36
SCN1A-222ENST00000642141 TEKT1Q969V4 418 aa12.81□□□□□ -0.36
SCN1A-222ENST00000642141 R3HDMLQ9H3Y0 253 aa12.81□□□□□ -0.36
SCN1A-222ENST00000642141 PPP2R3BQ9Y5P8 575 aa12.81□□□□□ -0.36
SCN1A-222ENST00000642141 CIAO1O76071 339 aa12.8□□□□□ -0.36
SCN1A-222ENST00000642141 GNAI3P08754 354 aa12.8□□□□□ -0.36
SCN1A-222ENST00000642141 IL15P40933 162 aaPredicted RBP12.8□□□□□ -0.36
SCN1A-222ENST00000642141 PHKA1P46020 1223 aa12.8□□□□□ -0.36
SCN1A-222ENST00000642141 TM4SF4P48230 202 aa12.8□□□□□ -0.36
SCN1A-222ENST00000642141 ATF7IPQ6VMQ6 1270 aa12.8□□□□□ -0.36
SCN1A-222ENST00000642141 REM2Q8IYK8 340 aaPredicted RBP12.8□□□□□ -0.36
SCN1A-222ENST00000642141 HDAC5Q9UQL6 1122 aa12.8□□□□□ -0.36
SCN1A-222ENST00000642141 IREB2P48200 963 aaKnown RBP12.79□□□□□ -0.36
SCN1A-222ENST00000642141 TFCP2Q12800 502 aa12.79□□□□□ -0.36
SCN1A-222ENST00000642141 TNFAIP1Q13829 316 aa12.79□□□□□ -0.36
SCN1A-222ENST00000642141 DIXDC1Q155Q3 683 aa12.79□□□□□ -0.36
SCN1A-222ENST00000642141 APOBEC3HQ6NTF7 200 aaKnown RBP12.79□□□□□ -0.36
SCN1A-222ENST00000642141 TMEM57Q8N5G2 664 aa12.79□□□□□ -0.36
SCN1A-222ENST00000642141 CNKSR2Q8WXI2 1034 aa12.79□□□□□ -0.36
SCN1A-222ENST00000642141 WNK4Q96J92 1243 aa12.79□□□□□ -0.36
SCN1A-222ENST00000642141 TEPSINQ96N21 525 aa12.79□□□□□ -0.36
SCN1A-222ENST00000642141 ELP3Q9H9T3 547 aa12.79□□□□□ -0.36
SCN1A-222ENST00000642141 COPRSQ9NQ92 184 aa12.79□□□□□ -0.36
SCN1A-222ENST00000642141 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.79□□□□□ -0.36
SCN1A-222ENST00000642141 COL1A1P02452 1464 aaPredicted RBP12.78□□□□□ -0.36
SCN1A-222ENST00000642141 PRDX5P30044 214 aa12.78□□□□□ -0.36
SCN1A-222ENST00000642141 GJA5P36382 358 aa12.78□□□□□ -0.36
SCN1A-222ENST00000642141 TNNI2P48788 182 aa12.78□□□□□ -0.36
SCN1A-222ENST00000642141 SREBF2Q12772 1141 aa12.78□□□□□ -0.36
SCN1A-222ENST00000642141 WDR66Q8TBY9 1149 aa12.78□□□□□ -0.36
SCN1A-222ENST00000642141 ZDHHC15Q96MV8 337 aa12.78□□□□□ -0.36
SCN1A-222ENST00000642141 GNL3LQ9NVN8 582 aaKnown RBP12.78□□□□□ -0.36
SCN1A-222ENST00000642141 PNMA6EA0A0J9YXQ4 647 aa12.77□□□□□ -0.37
SCN1A-222ENST00000642141 GNAI2P04899 355 aa12.77□□□□□ -0.37
SCN1A-222ENST00000642141 HDLBPQ00341 1268 aaKnown RBP12.77□□□□□ -0.37
SCN1A-222ENST00000642141 TCP10Q12799 353 aa12.77□□□□□ -0.37
SCN1A-222ENST00000642141 MAP3K11Q16584 847 aa12.77□□□□□ -0.37
SCN1A-222ENST00000642141 ZKSCAN2Q63HK3 967 aa12.77□□□□□ -0.37
SCN1A-222ENST00000642141 CCDC102BQ68D86 513 aa12.77□□□□□ -0.37
SCN1A-222ENST00000642141 ZNF296Q8WUU4 475 aaPredicted RBP12.77□□□□□ -0.37
SCN1A-222ENST00000642141 NEUROD6Q96NK8 337 aa12.77□□□□□ -0.37
SCN1A-222ENST00000642141 C1orf115Q9H7X2 142 aa12.77□□□□□ -0.37
SCN1A-222ENST00000642141 TMOD2Q9NZR1 351 aa12.77□□□□□ -0.37
SCN1A-222ENST00000642141 FBXO3Q9UK99 471 aa12.77□□□□□ -0.37
SCN1A-222ENST00000642141 AKAP11Q9UKA4 1901 aa12.77□□□□□ -0.37
SCN1A-222ENST00000642141 MANSC4A6NHS7 340 aaPredicted RBP12.76□□□□□ -0.37
SCN1A-222ENST00000642141 GPR25O00155 361 aa12.76□□□□□ -0.37
SCN1A-222ENST00000642141 LDHBP07195 334 aaKnown RBP12.76□□□□□ -0.37
SCN1A-222ENST00000642141 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.76□□□□□ -0.37
SCN1A-222ENST00000642141 MIGA2Q7L4E1 593 aa12.76□□□□□ -0.37
SCN1A-222ENST00000642141 IFNL1Q8IU54 200 aa12.76□□□□□ -0.37
SCN1A-222ENST00000642141 ANKRD13AQ8IZ07 590 aa12.76□□□□□ -0.37
SCN1A-222ENST00000642141 OPTNQ96CV9 577 aa12.76□□□□□ -0.37
SCN1A-222ENST00000642141 XAGE2Q96GT9 111 aa12.76□□□□□ -0.37
SCN1A-222ENST00000642141 DAGLAQ9Y4D2 1042 aa12.76□□□□□ -0.37
SCN1A-222ENST00000642141 A0A1B0GUL7 405 aa12.75□□□□□ -0.37
SCN1A-222ENST00000642141 IGF2BP3O00425 579 aaKnown RBP eCLIP12.75□□□□□ -0.37
SCN1A-222ENST00000642141 MAST3O60307 1309 aa12.75□□□□□ -0.37
SCN1A-222ENST00000642141 MAP3K9P80192 1104 aa12.75□□□□□ -0.37
SCN1A-222ENST00000642141 RASGRF1Q13972 1273 aa12.75□□□□□ -0.37
SCN1A-222ENST00000642141 VGLL4Q14135 290 aa12.75□□□□□ -0.37
SCN1A-222ENST00000642141 ECM29Q5VYK3 1845 aa12.75□□□□□ -0.37
SCN1A-222ENST00000642141 CDC42EP5Q6NZY7 148 aa12.75□□□□□ -0.37
SCN1A-222ENST00000642141 HHIPL2Q6UWX4 724 aa12.75□□□□□ -0.37
SCN1A-222ENST00000642141 CTU1Q7Z7A3 348 aaKnown RBP12.75□□□□□ -0.37
SCN1A-222ENST00000642141 ZKSCAN4Q969J2 545 aaPredicted RBP12.75□□□□□ -0.37
SCN1A-222ENST00000642141 MRIQ9BWK5 157 aa12.75□□□□□ -0.37
SCN1A-222ENST00000642141 USP40Q9NVE5 1235 aa12.75□□□□□ -0.37
SCN1A-222ENST00000642141 ABCF2Q9UG63 623 aa12.75□□□□□ -0.37
SCN1A-222ENST00000642141 DENND2AQ9ULE3 1009 aa12.75□□□□□ -0.37
SCN1A-222ENST00000642141 SUGT1Q9Y2Z0 365 aa12.75□□□□□ -0.37
SCN1A-222ENST00000642141 ZBTB48P10074 688 aaPredicted RBP12.74□□□□□ -0.37
SCN1A-222ENST00000642141 RLBP1P12271 317 aa12.74□□□□□ -0.37
SCN1A-222ENST00000642141 NFIAQ12857 509 aa12.74□□□□□ -0.37
SCN1A-222ENST00000642141 G3BP1Q13283 466 aaKnown RBP eCLIP12.74□□□□□ -0.37
SCN1A-222ENST00000642141 MTX1Q13505 466 aa12.74□□□□□ -0.37
SCN1A-222ENST00000642141 GORABQ5T7V8 394 aa12.74□□□□□ -0.37
SCN1A-222ENST00000642141 PI16Q6UXB8 463 aa12.74□□□□□ -0.37
SCN1A-222ENST00000642141 ITPRIPQ8IWB1 547 aa12.74□□□□□ -0.37
SCN1A-222ENST00000642141 ZFPM1Q8IX07 1006 aa12.74□□□□□ -0.37
SCN1A-222ENST00000642141 FTSJ3Q8IY81 847 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms