RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 CHRNDQ07001 517 aa21.75■■□□□ 1.07
CLN3-263ENST00000637871 CCDC83Q8IWF9 413 aa21.75■■□□□ 1.07
CLN3-263ENST00000637871 TMEM87AQ8NBN3 555 aa21.75■■□□□ 1.07
CLN3-263ENST00000637871 CYP21A2P08686 494 aa21.74■■□□□ 1.07
CLN3-263ENST00000637871 CPA1P15085 419 aa21.74■■□□□ 1.07
CLN3-263ENST00000637871 SYT1P21579 422 aa21.74■■□□□ 1.07
CLN3-263ENST00000637871 CCDC93Q567U6 631 aa21.74■■□□□ 1.07
CLN3-263ENST00000637871 SYAP1Q96A49 352 aaPredicted RBP21.74■■□□□ 1.07
CLN3-263ENST00000637871 TPCN1Q9ULQ1 816 aa21.74■■□□□ 1.07
CLN3-263ENST00000637871 HSPD1P10809 573 aaKnown RBP21.73■■□□□ 1.07
CLN3-263ENST00000637871 SLC5A1P13866 664 aa21.73■■□□□ 1.07
CLN3-263ENST00000637871 GJB2P29033 226 aa21.73■■□□□ 1.07
CLN3-263ENST00000637871 ARID4AP29374 1257 aaPredicted RBP21.73■■□□□ 1.07
CLN3-263ENST00000637871 ADORA1P30542 326 aa21.73■■□□□ 1.07
CLN3-263ENST00000637871 DHX32Q7L7V1 743 aaKnown RBP21.73■■□□□ 1.07
CLN3-263ENST00000637871 FBXL16Q8N461 479 aa21.73■■□□□ 1.07
CLN3-263ENST00000637871 SEC62Q99442 399 aaKnown RBP21.73■■□□□ 1.07
CLN3-263ENST00000637871 NSFL1CQ9UNZ2 370 aaKnown RBP21.73■■□□□ 1.07
CLN3-263ENST00000637871 NDUFB9Q9Y6M9 179 aa21.73■■□□□ 1.07
CLN3-263ENST00000637871 MAST3O60307 1309 aa21.73■■□□□ 1.07
CLN3-263ENST00000637871 NFKBIEO00221 500 aa21.73■■□□□ 1.07
CLN3-263ENST00000637871 FGFR2P21802 821 aa21.73■■□□□ 1.07
CLN3-263ENST00000637871 ARHGAP27Q6ZUM4 889 aa21.73■■□□□ 1.07
CLN3-263ENST00000637871 TMC4Q7Z404 712 aa21.73■■□□□ 1.07
CLN3-263ENST00000637871 ANKIB1Q9P2G1 1089 aa21.73■■□□□ 1.07
CLN3-263ENST00000637871 TOB2Q14106 344 aaPredicted RBP21.72■■□□□ 1.07
CLN3-263ENST00000637871 CCDC129Q6ZRS4 1044 aa21.72■■□□□ 1.07
CLN3-263ENST00000637871 GRPEL1Q9HAV7 217 aa21.72■■□□□ 1.07
CLN3-263ENST00000637871 F13A1P00488 732 aa21.71■■□□□ 1.07
CLN3-263ENST00000637871 UBE3CQ15386 1083 aa21.71■■□□□ 1.07
CLN3-263ENST00000637871 DPP8Q6V1X1 898 aaPredicted RBP21.71■■□□□ 1.07
CLN3-263ENST00000637871 MPNDQ8N594 471 aa21.71■■□□□ 1.07
CLN3-263ENST00000637871 LLPHQ9BRT6 129 aaKnown RBP21.71■■□□□ 1.07
CLN3-263ENST00000637871 TMX4Q9H1E5 349 aaPredicted RBP21.71■■□□□ 1.07
CLN3-263ENST00000637871 LARGE1O95461 756 aa21.7■■□□□ 1.06
CLN3-263ENST00000637871 ZAP70P43403 619 aa21.7■■□□□ 1.06
CLN3-263ENST00000637871 PRELPP51888 382 aa21.7■■□□□ 1.06
CLN3-263ENST00000637871 AGXT2Q9BYV1 514 aa21.7■■□□□ 1.06
CLN3-263ENST00000637871 POLLQ9UGP5 575 aa21.7■■□□□ 1.06
CLN3-263ENST00000637871 KIF3AQ9Y496 699 aa21.7■■□□□ 1.06
CLN3-263ENST00000637871 XDHP47989 1333 aa21.7■■□□□ 1.06
CLN3-263ENST00000637871 UFL1O94874 794 aa21.69■■□□□ 1.06
CLN3-263ENST00000637871 XRCC6P12956 609 aaKnown RBP eCLIP21.69■■□□□ 1.06
CLN3-263ENST00000637871 KLRK1P26718 216 aa21.69■■□□□ 1.06
CLN3-263ENST00000637871 IMMTQ16891 758 aaKnown RBP21.69■■□□□ 1.06
CLN3-263ENST00000637871 ZNF277Q9NRM2 450 aaPredicted RBP21.69■■□□□ 1.06
CLN3-263ENST00000637871 WASHC4Q2M389 1173 aa21.69■■□□□ 1.06
CLN3-263ENST00000637871 SOGA3Q5TF21 947 aa21.69■■□□□ 1.06
CLN3-263ENST00000637871 TBC1D16Q8TBP0 767 aa21.69■■□□□ 1.06
CLN3-263ENST00000637871 OSBP2Q969R2 916 aa21.69■■□□□ 1.06
CLN3-263ENST00000637871 CCDC88AQ3V6T2 1871 aa21.68■■□□□ 1.06
CLN3-263ENST00000637871 C6orf229H3BNL8 230 aa21.68■■□□□ 1.06
CLN3-263ENST00000637871 EXOSC10Q01780 885 aaKnown RBP21.68■■□□□ 1.06
CLN3-263ENST00000637871 LARP1BQ659C4 914 aaKnown RBP21.68■■□□□ 1.06
CLN3-263ENST00000637871 CCDC102BQ68D86 513 aa21.68■■□□□ 1.06
CLN3-263ENST00000637871 RTKN2Q8IZC4 609 aa21.68■■□□□ 1.06
CLN3-263ENST00000637871 TAOK3Q9H2K8 898 aa21.68■■□□□ 1.06
CLN3-263ENST00000637871 MTMR6Q9Y217 621 aa21.68■■□□□ 1.06
CLN3-263ENST00000637871 WDR19Q8NEZ3 1342 aa21.68■■□□□ 1.06
CLN3-263ENST00000637871 COL4A5P29400 1685 aa21.67■■□□□ 1.06
CLN3-263ENST00000637871 ADD2P35612 726 aa21.67■■□□□ 1.06
CLN3-263ENST00000637871 MCAMP43121 646 aa21.67■■□□□ 1.06
CLN3-263ENST00000637871 FGD1P98174 961 aa21.67■■□□□ 1.06
CLN3-263ENST00000637871 CC2D2BQ6DHV5 1058 aa21.67■■□□□ 1.06
CLN3-263ENST00000637871 Q6ZUG5 572 aa21.67■■□□□ 1.06
CLN3-263ENST00000637871 GTF3C6Q969F1 213 aa21.67■■□□□ 1.06
CLN3-263ENST00000637871 PODXL2Q9NZ53 605 aa21.67■■□□□ 1.06
CLN3-263ENST00000637871 GGA1Q9UJY5 639 aa21.67■■□□□ 1.06
CLN3-263ENST00000637871 CAVIN1Q6NZI2 390 aaKnown RBP21.66■■□□□ 1.06
CLN3-263ENST00000637871 ANKRD2Q9GZV1 360 aa21.66■■□□□ 1.06
CLN3-263ENST00000637871 SBF1O95248 1867 aa21.66■■□□□ 1.06
CLN3-263ENST00000637871 E7EWF7 191 aa21.66■■□□□ 1.06
CLN3-263ENST00000637871 M0R2C6 588 aa21.66■■□□□ 1.06
CLN3-263ENST00000637871 RIMBP2O15034 1052 aa21.66■■□□□ 1.06
CLN3-263ENST00000637871 HMGN5P82970 282 aaKnown RBP21.66■■□□□ 1.06
CLN3-263ENST00000637871 ST3GAL1Q11201 340 aa21.66■■□□□ 1.06
CLN3-263ENST00000637871 ZSCAN23Q3MJ62 389 aa21.66■■□□□ 1.06
CLN3-263ENST00000637871 FOXD4L5Q5VV16 416 aaPredicted RBP21.66■■□□□ 1.06
CLN3-263ENST00000637871 GPT2Q8TD30 523 aa21.66■■□□□ 1.06
CLN3-263ENST00000637871 FOXD4L4Q8WXT5 416 aaPredicted RBP21.66■■□□□ 1.06
CLN3-263ENST00000637871 ZNF274Q96GC6 653 aaPredicted RBP21.66■■□□□ 1.06
CLN3-263ENST00000637871 LARP6Q9BRS8 491 aaKnown RBP21.66■■□□□ 1.06
CLN3-263ENST00000637871 ZNF804BA4D1E1 1349 aa21.65■■□□□ 1.06
CLN3-263ENST00000637871 PFKFB2O60825 505 aa21.65■■□□□ 1.06
CLN3-263ENST00000637871 LETM1O95202 739 aaPredicted RBP21.65■■□□□ 1.06
CLN3-263ENST00000637871 SCARF1Q14162 830 aa21.65■■□□□ 1.06
CLN3-263ENST00000637871 AOC3Q16853 763 aa21.65■■□□□ 1.06
CLN3-263ENST00000637871 TXNRD3Q86VQ6 643 aa21.65■■□□□ 1.06
CLN3-263ENST00000637871 PSMD1Q99460 953 aa21.65■■□□□ 1.06
CLN3-263ENST00000637871 TAF6LQ9Y6J9 622 aa21.65■■□□□ 1.06
CLN3-263ENST00000637871 ARAP2Q8WZ64 1704 aa21.64■■□□□ 1.06
CLN3-263ENST00000637871 EVCP57679 992 aa21.64■■□□□ 1.05
CLN3-263ENST00000637871 NECAB1Q8N987 351 aa21.64■■□□□ 1.05
CLN3-263ENST00000637871 RTFDC1Q9BY42 306 aaPredicted RBP21.64■■□□□ 1.05
CLN3-263ENST00000637871 GRIN3BO60391 1043 aa21.63■■□□□ 1.05
CLN3-263ENST00000637871 ATP2B4P23634 1241 aa21.63■■□□□ 1.05
CLN3-263ENST00000637871 UBE2HP62256 183 aa21.63■■□□□ 1.05
CLN3-263ENST00000637871 MAP3K12Q12852 859 aa21.63■■□□□ 1.05
CLN3-263ENST00000637871 ALX1Q15699 326 aa21.63■■□□□ 1.05
CLN3-263ENST00000637871 ANP32BQ92688 251 aaKnown RBP21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms