RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ITPRIPQ8IWB1 547 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 PRDM10Q9NQV6 1147 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.86■■□□□ 1.41
CLN3-260ENST00000637578 ECM29Q5VYK3 1845 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 SSH3Q8TE77 659 aa23.85■■□□□ 1.41
CLN3-260ENST00000637578 GNL3LQ9NVN8 582 aaKnown RBP23.85■■□□□ 1.41
CLN3-260ENST00000637578 AKAP2Q9Y2D5 859 aa23.85■■□□□ 1.41
CLN3-260ENST00000637578 SEMA3EO15041 775 aa23.84■■□□□ 1.41
CLN3-260ENST00000637578 ADORA1P30542 326 aa23.84■■□□□ 1.41
CLN3-260ENST00000637578 PHKA1P46020 1223 aa23.84■■□□□ 1.41
CLN3-260ENST00000637578 TIMM10P62072 90 aa23.84■■□□□ 1.41
CLN3-260ENST00000637578 ZNF70Q9UC06 446 aaPredicted RBP23.84■■□□□ 1.41
CLN3-260ENST00000637578 UBE2Q2LH0YL09 131 aa23.83■■□□□ 1.41
CLN3-260ENST00000637578 HSPA8P11142 646 aaKnown RBP23.83■■□□□ 1.41
CLN3-260ENST00000637578 IFFO2Q5TF58 517 aa23.83■■□□□ 1.41
CLN3-260ENST00000637578 CCDC102BQ68D86 513 aa23.83■■□□□ 1.41
CLN3-260ENST00000637578 TEKT1Q969V4 418 aa23.83■■□□□ 1.41
CLN3-260ENST00000637578 TDRD3Q9H7E2 651 aaKnown RBP23.83■■□□□ 1.41
CLN3-260ENST00000637578 A0A1B0GUL7 405 aa23.82■■□□□ 1.4
CLN3-260ENST00000637578 RASAL3Q86YV0 1011 aa23.82■■□□□ 1.4
CLN3-260ENST00000637578 ZDHHC15Q96MV8 337 aa23.82■■□□□ 1.4
CLN3-260ENST00000637578 BEGAINQ9BUH8 593 aa23.82■■□□□ 1.4
CLN3-260ENST00000637578 VEZTQ9HBM0 779 aa23.82■■□□□ 1.4
CLN3-260ENST00000637578 MAST3O60307 1309 aa23.82■■□□□ 1.4
CLN3-260ENST00000637578 SALL1Q9NSC2 1324 aa23.82■■□□□ 1.4
CLN3-260ENST00000637578 LBX1P52954 281 aa23.82■■□□□ 1.4
CLN3-260ENST00000637578 MAP3K11Q16584 847 aa23.82■■□□□ 1.4
CLN3-260ENST00000637578 LDLRAD1Q5T700 205 aa23.82■■□□□ 1.4
CLN3-260ENST00000637578 HHIPL2Q6UWX4 724 aa23.82■■□□□ 1.4
CLN3-260ENST00000637578 PANK1Q8TE04 598 aa23.82■■□□□ 1.4
CLN3-260ENST00000637578 DENND2AQ9ULE3 1009 aa23.82■■□□□ 1.4
CLN3-260ENST00000637578 CA12O43570 354 aa23.81■■□□□ 1.4
CLN3-260ENST00000637578 G3BP1Q13283 466 aaKnown RBP eCLIP23.81■■□□□ 1.4
CLN3-260ENST00000637578 TNFAIP1Q13829 316 aa23.81■■□□□ 1.4
CLN3-260ENST00000637578 RASA3Q14644 834 aa23.81■■□□□ 1.4
CLN3-260ENST00000637578 APOBEC3HQ6NTF7 200 aaKnown RBP23.81■■□□□ 1.4
CLN3-260ENST00000637578 XAGE2Q96GT9 111 aa23.81■■□□□ 1.4
CLN3-260ENST00000637578 MS4A1P11836 297 aa23.8■■□□□ 1.4
CLN3-260ENST00000637578 KIF23Q02241 960 aaPredicted RBP23.8■■□□□ 1.4
CLN3-260ENST00000637578 ARMC9Q7Z3E5 817 aa23.8■■□□□ 1.4
CLN3-260ENST00000637578 C1orf115Q9H7X2 142 aa23.8■■□□□ 1.4
CLN3-260ENST00000637578 PDS5AQ29RF7 1337 aaKnown RBP23.8■■□□□ 1.4
CLN3-260ENST00000637578 SSC5DA1L4H1 1573 aa23.8■■□□□ 1.4
CLN3-260ENST00000637578 TTLL12Q14166 644 aaPredicted RBP23.79■■□□□ 1.4
CLN3-260ENST00000637578 SUPT20HL1Q3ZLR7 823 aa23.79■■□□□ 1.4
CLN3-260ENST00000637578 NBPF12Q5TAG4 269 aaPredicted RBP23.78■■□□□ 1.4
CLN3-260ENST00000637578 NOP58Q9Y2X3 529 aaKnown RBP23.78■■□□□ 1.4
CLN3-260ENST00000637578 RASGRF1Q13972 1273 aa23.78■■□□□ 1.4
CLN3-260ENST00000637578 MVPQ14764 893 aaKnown RBP23.78■■□□□ 1.4
CLN3-260ENST00000637578 TEPSINQ96N21 525 aa23.78■■□□□ 1.4
CLN3-260ENST00000637578 CSRNP1Q96S65 589 aa23.78■■□□□ 1.4
CLN3-260ENST00000637578 UNCXA6NJT0 531 aa23.77■■□□□ 1.4
CLN3-260ENST00000637578 PRDX5P30044 214 aa23.77■■□□□ 1.4
CLN3-260ENST00000637578 REM2Q8IYK8 340 aaPredicted RBP23.77■■□□□ 1.4
CLN3-260ENST00000637578 GPR108Q9NPR9 543 aa23.77■■□□□ 1.4
CLN3-260ENST00000637578 ANGEL1Q9UNK9 670 aaKnown RBP23.77■■□□□ 1.4
CLN3-260ENST00000637578 MYH13Q9UKX3 1938 aa23.76■■□□□ 1.39
CLN3-260ENST00000637578 PPP1R12BO60237 982 aaPredicted RBP23.76■■□□□ 1.39
CLN3-260ENST00000637578 PRKG1Q13976 671 aa23.76■■□□□ 1.39
CLN3-260ENST00000637578 FKBP1CQ5VVH2 108 aa23.76■■□□□ 1.39
CLN3-260ENST00000637578 NEUROD6Q96NK8 337 aa23.76■■□□□ 1.39
CLN3-260ENST00000637578 FZD1Q9UP38 647 aa23.76■■□□□ 1.39
CLN3-260ENST00000637578 TCP10L2B9ZVM9 353 aa23.75■■□□□ 1.39
CLN3-260ENST00000637578 LDHBP07195 334 aaKnown RBP23.75■■□□□ 1.39
CLN3-260ENST00000637578 CEP85Q6P2H3 762 aa23.75■■□□□ 1.39
CLN3-260ENST00000637578 TNS4Q8IZW8 715 aa23.75■■□□□ 1.39
CLN3-260ENST00000637578 SURF6O75683 361 aaKnown RBP23.74■■□□□ 1.39
CLN3-260ENST00000637578 TNNI2P48788 182 aa23.74■■□□□ 1.39
CLN3-260ENST00000637578 ZGPATQ8N5A5 531 aaKnown RBP23.74■■□□□ 1.39
CLN3-260ENST00000637578 USP2O75604 605 aaPredicted RBP23.74■■□□□ 1.39
CLN3-260ENST00000637578 FAM83AQ86UY5 434 aa23.74■■□□□ 1.39
CLN3-260ENST00000637578 TMEM39BQ9GZU3 492 aa23.74■■□□□ 1.39
CLN3-260ENST00000637578 SAGE1Q9NXZ1 904 aa23.74■■□□□ 1.39
CLN3-260ENST00000637578 DAGLAQ9Y4D2 1042 aa23.74■■□□□ 1.39
CLN3-260ENST00000637578 ARID4AP29374 1257 aaPredicted RBP23.73■■□□□ 1.39
CLN3-260ENST00000637578 DIXDC1Q155Q3 683 aa23.73■■□□□ 1.39
CLN3-260ENST00000637578 CDAN1Q8IWY9 1227 aa23.73■■□□□ 1.39
CLN3-260ENST00000637578 TSKSQ9UJT2 592 aa23.73■■□□□ 1.39
CLN3-260ENST00000637578 CACNB3P54284 484 aa23.72■■□□□ 1.39
CLN3-260ENST00000637578 TNNI3KQ59H18 835 aa23.71■■□□□ 1.39
CLN3-260ENST00000637578 ZBTB40Q9NUA8 1239 aa23.71■■□□□ 1.39
CLN3-260ENST00000637578 RNF186Q9NXI6 227 aa23.71■■□□□ 1.39
CLN3-260ENST00000637578 TMOD2Q9NZR1 351 aa23.71■■□□□ 1.39
CLN3-260ENST00000637578 HMG20BQ9P0W2 317 aa23.71■■□□□ 1.39
CLN3-260ENST00000637578 DDX19BQ9UMR2 479 aa23.71■■□□□ 1.39
CLN3-260ENST00000637578 FPGT-TNNI3KV9GXZ4 949 aa23.71■■□□□ 1.39
CLN3-260ENST00000637578 IREB2P48200 963 aaKnown RBP23.7■■□□□ 1.38
CLN3-260ENST00000637578 SPRYD7Q5W111 196 aa23.7■■□□□ 1.38
CLN3-260ENST00000637578 CDC42EP5Q6NZY7 148 aa23.7■■□□□ 1.38
CLN3-260ENST00000637578 FAM163AQ96GL9 167 aaPredicted RBP23.7■■□□□ 1.38
CLN3-260ENST00000637578 COG6Q9Y2V7 657 aa23.7■■□□□ 1.38
CLN3-260ENST00000637578 TM4SF4P48230 202 aa23.69■■□□□ 1.38
CLN3-260ENST00000637578 OS9Q13438 667 aaPredicted RBP23.69■■□□□ 1.38
CLN3-260ENST00000637578 GORABQ5T7V8 394 aa23.69■■□□□ 1.38
CLN3-260ENST00000637578 SLC10A4Q96EP9 437 aa23.69■■□□□ 1.38
CLN3-260ENST00000637578 GAKO14976 1311 aa23.69■■□□□ 1.38
CLN3-260ENST00000637578 SPTY2D1Q68D10 685 aaPredicted RBP23.69■■□□□ 1.38
CLN3-260ENST00000637578 SPATA5Q8NB90 893 aa23.69■■□□□ 1.38
CLN3-260ENST00000637578 CLMNQ96JQ2 1002 aa23.69■■□□□ 1.38
CLN3-260ENST00000637578 UQCRFS1P1P0C7P4 283 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms