RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 GSTM4Q03013 218 aa3.5□□□□□ -1.85
SCN1A-215ENST00000637285 MESP2Q0VG99 397 aa3.5□□□□□ -1.85
SCN1A-215ENST00000637285 MLANAQ16655 118 aa3.5□□□□□ -1.85
SCN1A-215ENST00000637285 CDCA8Q53HL2 280 aa3.5□□□□□ -1.85
SCN1A-215ENST00000637285 PDE12Q6L8Q7 609 aaKnown RBP3.5□□□□□ -1.85
SCN1A-215ENST00000637285 CAPN12Q6ZSI9 719 aa3.5□□□□□ -1.85
SCN1A-215ENST00000637285 VN1R5Q7Z5H4 357 aa3.5□□□□□ -1.85
SCN1A-215ENST00000637285 C1orf127Q8N9H9 656 aa3.5□□□□□ -1.85
SCN1A-215ENST00000637285 ZSCAN18Q8TBC5 510 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-215ENST00000637285 PI4K2BQ8TCG2 481 aa3.5□□□□□ -1.85
SCN1A-215ENST00000637285 ASAP3Q8TDY4 903 aa3.5□□□□□ -1.85
SCN1A-215ENST00000637285 BSNDQ8WZ55 320 aa3.5□□□□□ -1.85
SCN1A-215ENST00000637285 NUDT16Q96DE0 195 aaKnown RBP3.5□□□□□ -1.85
SCN1A-215ENST00000637285 OSMRQ99650 979 aa3.5□□□□□ -1.85
SCN1A-215ENST00000637285 SEMA6CQ9H3T2 930 aa3.5□□□□□ -1.85
SCN1A-215ENST00000637285 ADAMTS6Q9UKP5 1117 aa3.5□□□□□ -1.85
SCN1A-215ENST00000637285 AKAP4Q5JQC9 854 aa3.49□□□□□ -1.85
SCN1A-215ENST00000637285 LCNL1Q6ZST4 164 aa3.49□□□□□ -1.85
SCN1A-215ENST00000637285 LRRC56Q8IYG6 542 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-215ENST00000637285 PLD6Q8N2A8 252 aaKnown RBP3.49□□□□□ -1.85
SCN1A-215ENST00000637285 TMEM102Q8N9M5 508 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-215ENST00000637285 LRRN4CLQ8ND94 238 aa3.49□□□□□ -1.85
SCN1A-215ENST00000637285 NXPE3Q969Y0 559 aa3.49□□□□□ -1.85
SCN1A-215ENST00000637285 MISP3Q96FF7 219 aa3.49□□□□□ -1.85
SCN1A-215ENST00000637285 CALR3Q96L12 384 aaKnown RBP3.49□□□□□ -1.85
SCN1A-215ENST00000637285 DAGLAQ9Y4D2 1042 aa3.49□□□□□ -1.85
SCN1A-215ENST00000637285 DYNC1LI2O43237 492 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-215ENST00000637285 ZSCAN22P10073 491 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-215ENST00000637285 RFX1P22670 979 aa3.48□□□□□ -1.85
SCN1A-215ENST00000637285 OGFOD3Q6PK18 319 aa3.48□□□□□ -1.85
SCN1A-215ENST00000637285 CILP2Q8IUL8 1156 aa3.48□□□□□ -1.85
SCN1A-215ENST00000637285 FAM181AQ8N9Y4 354 aa3.48□□□□□ -1.85
SCN1A-215ENST00000637285 FAM105AQ9NUU6 356 aa3.48□□□□□ -1.85
SCN1A-215ENST00000637285 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.48□□□□□ -1.85
SCN1A-215ENST00000637285 LMCD1Q9NZU5 365 aa3.48□□□□□ -1.85
SCN1A-215ENST00000637285 STIM2Q9P246 746 aa3.48□□□□□ -1.85
SCN1A-215ENST00000637285 AP4E1Q9UPM8 1137 aa3.48□□□□□ -1.85
SCN1A-215ENST00000637285 ESRRAP11474 423 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-215ENST00000637285 ASPAP45381 313 aa3.47□□□□□ -1.85
SCN1A-215ENST00000637285 FLIIQ13045 1269 aa3.47□□□□□ -1.85
SCN1A-215ENST00000637285 ECM1Q16610 540 aa3.47□□□□□ -1.85
SCN1A-215ENST00000637285 CYP27C1Q4G0S4 372 aa3.47□□□□□ -1.85
SCN1A-215ENST00000637285 ATCAYQ86WG3 371 aa3.47□□□□□ -1.85
SCN1A-215ENST00000637285 ANKLE2Q86XL3 938 aa3.47□□□□□ -1.85
SCN1A-215ENST00000637285 C1QL4Q86Z23 238 aa3.47□□□□□ -1.85
SCN1A-215ENST00000637285 ABTB2Q8N961 1025 aa3.47□□□□□ -1.85
SCN1A-215ENST00000637285 BHLHE22Q8NFJ8 381 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-215ENST00000637285 NETO1Q8TDF5 533 aa3.47□□□□□ -1.85
SCN1A-215ENST00000637285 ZKSCAN3Q9BRR0 538 aa3.47□□□□□ -1.85
SCN1A-215ENST00000637285 SOX17Q9H6I2 414 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-215ENST00000637285 ACSS3Q9H6R3 686 aa3.47□□□□□ -1.85
SCN1A-215ENST00000637285 C1GALT1Q9NS00 363 aa3.47□□□□□ -1.85
SCN1A-215ENST00000637285 RAD18Q9NS91 495 aa3.47□□□□□ -1.85
SCN1A-215ENST00000637285 NOVA2Q9UNW9 492 aaKnown RBP3.47□□□□□ -1.85
SCN1A-215ENST00000637285 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-215ENST00000637285 A6NHS1 94 aa3.46□□□□□ -1.86
SCN1A-215ENST00000637285 FAM87AP0C7U9 286 aa3.46□□□□□ -1.86
SCN1A-215ENST00000637285 MAOBP27338 520 aa3.46□□□□□ -1.86
SCN1A-215ENST00000637285 KCNMB1Q16558 191 aa3.46□□□□□ -1.86
SCN1A-215ENST00000637285 OCLNQ16625 522 aa3.46□□□□□ -1.86
SCN1A-215ENST00000637285 C8orf34Q49A92 452 aa3.46□□□□□ -1.86
SCN1A-215ENST00000637285 ZSWIM9Q86XI8 627 aa3.46□□□□□ -1.86
SCN1A-215ENST00000637285 TTC16Q8NEE8 873 aa3.46□□□□□ -1.86
SCN1A-215ENST00000637285 FAM53CQ9NYF3 392 aa3.46□□□□□ -1.86
SCN1A-215ENST00000637285 ZNF503-AS2A6NEH8 195 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 TSPAN15O95858 294 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 RPLP1P05386 114 aaKnown RBP3.45□□□□□ -1.86
SCN1A-215ENST00000637285 CTSBP07858 339 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 PRKCQQ04759 706 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 DNM1Q05193 864 aaKnown RBP3.45□□□□□ -1.86
SCN1A-215ENST00000637285 CDK5R2Q13319 367 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 AOC3Q16853 763 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 SWI5Q1ZZU3 235 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 SEZ6L2Q6UXD5 910 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 ARHGAP27Q6ZUM4 889 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 TTLL10Q6ZVT0 673 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 SYDE1Q6ZW31 735 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-215ENST00000637285 SIAH1Q8IUQ4 282 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 EDEM1Q92611 657 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 PMEPA1Q969W9 287 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 CLUAP1Q96AJ1 413 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 LIN37Q96GY3 246 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-215ENST00000637285 KRTAP9-3Q9BYQ3 159 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 CHRDQ9H2X0 955 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 PRDM7Q9NQW5 492 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 VAV3Q9UKW4 847 aa3.45□□□□□ -1.86
SCN1A-215ENST00000637285 ACIN1Q9UKV3 1341 aaKnown RBP3.44□□□□□ -1.86
SCN1A-215ENST00000637285 METTL12A8MUP2 240 aa3.44□□□□□ -1.86
SCN1A-215ENST00000637285 EREGO14944 169 aa3.44□□□□□ -1.86
SCN1A-215ENST00000637285 PCSK2P16519 638 aa3.44□□□□□ -1.86
SCN1A-215ENST00000637285 POU4F3Q15319 338 aa3.44□□□□□ -1.86
SCN1A-215ENST00000637285 XKR5Q6UX68 686 aa3.44□□□□□ -1.86
SCN1A-215ENST00000637285 PROSER2Q86WR7 435 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-215ENST00000637285 HRASLS5Q96KN8 279 aa3.44□□□□□ -1.86
SCN1A-215ENST00000637285 PPP1R16BQ96T49 567 aa3.44□□□□□ -1.86
SCN1A-215ENST00000637285 NRSN2Q9GZP1 204 aa3.44□□□□□ -1.86
SCN1A-215ENST00000637285 GGNBP2Q9H3C7 697 aa3.44□□□□□ -1.86
SCN1A-215ENST00000637285 CRIM1Q9NZV1 1036 aa3.44□□□□□ -1.86
SCN1A-215ENST00000637285 U3KQE9 123 aa3.44□□□□□ -1.86
SCN1A-215ENST00000637285 EIF4EBP3O60516 100 aaPredicted RBP3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms