RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 SIL1Q9H173 461 aa14.49□□□□□ -0.09
CLN3-257ENST00000637110 ZBED9Q6R2W3 1325 aa14.48□□□□□ -0.09
CLN3-257ENST00000637110 IRS2Q9Y4H2 1338 aa14.48□□□□□ -0.09
CLN3-257ENST00000637110 A0A1B0GUL6 1792 aa14.48□□□□□ -0.09
CLN3-257ENST00000637110 LAMB1P07942 1786 aa14.48□□□□□ -0.09
CLN3-257ENST00000637110 EYA2O00167 538 aa14.48□□□□□ -0.09
CLN3-257ENST00000637110 PDE8BO95263 885 aa14.48□□□□□ -0.09
CLN3-257ENST00000637110 ZBTB48P10074 688 aaPredicted RBP14.48□□□□□ -0.09
CLN3-257ENST00000637110 TRIM27P14373 513 aa14.48□□□□□ -0.09
CLN3-257ENST00000637110 MMP14P50281 582 aa14.48□□□□□ -0.09
CLN3-257ENST00000637110 ARHGEF6Q15052 776 aa14.48□□□□□ -0.09
CLN3-257ENST00000637110 DLGAP5Q15398 846 aa14.48□□□□□ -0.09
CLN3-257ENST00000637110 APOBEC3FQ8IUX4 373 aaKnown RBP14.48□□□□□ -0.09
CLN3-257ENST00000637110 CD99L2Q8TCZ2 262 aa14.48□□□□□ -0.09
CLN3-257ENST00000637110 SLC10A4Q96EP9 437 aa14.48□□□□□ -0.09
CLN3-257ENST00000637110 IQSEC3Q9UPP2 1182 aaPredicted RBP14.48□□□□□ -0.09
CLN3-257ENST00000637110 TNNQ9UQP3 1299 aa14.48□□□□□ -0.09
CLN3-257ENST00000637110 H0YGN5 161 aa14.47□□□□□ -0.09
CLN3-257ENST00000637110 IFIT1P09914 478 aaKnown RBP14.47□□□□□ -0.09
CLN3-257ENST00000637110 RBM5P52756 815 aaKnown RBP eCLIP14.47□□□□□ -0.09
CLN3-257ENST00000637110 CHAF1AQ13111 956 aaPredicted RBP14.47□□□□□ -0.09
CLN3-257ENST00000637110 PRKG1Q13976 671 aa14.47□□□□□ -0.09
CLN3-257ENST00000637110 SLC4A8Q2Y0W8 1093 aa14.47□□□□□ -0.09
CLN3-257ENST00000637110 LDLRAD1Q5T700 205 aa14.47□□□□□ -0.09
CLN3-257ENST00000637110 FTSJ3Q8IY81 847 aaKnown RBP14.47□□□□□ -0.09
CLN3-257ENST00000637110 FAM84BQ96KN1 310 aaPredicted RBP14.47□□□□□ -0.09
CLN3-257ENST00000637110 ANGEL1Q9UNK9 670 aaKnown RBP14.47□□□□□ -0.09
CLN3-257ENST00000637110 WNT10BO00744 389 aa14.46□□□□□ -0.09
CLN3-257ENST00000637110 SLC5A1P13866 664 aa14.46□□□□□ -0.09
CLN3-257ENST00000637110 RFX5P48382 616 aaPredicted RBP14.46□□□□□ -0.09
CLN3-257ENST00000637110 PUM3Q15397 648 aaKnown RBP14.46□□□□□ -0.09
CLN3-257ENST00000637110 SLC9C1Q4G0N8 1177 aa14.46□□□□□ -0.09
CLN3-257ENST00000637110 CERS5Q8N5B7 392 aa14.46□□□□□ -0.09
CLN3-257ENST00000637110 TDRD7Q8NHU6 1098 aaKnown RBP14.46□□□□□ -0.09
CLN3-257ENST00000637110 OTUD5Q96G74 571 aa14.46□□□□□ -0.09
CLN3-257ENST00000637110 ZNF333Q96JL9 665 aa14.46□□□□□ -0.09
CLN3-257ENST00000637110 COL1A1P02452 1464 aaPredicted RBP14.45□□□□□ -0.1
CLN3-257ENST00000637110 SP3Q02447 781 aa14.45□□□□□ -0.1
CLN3-257ENST00000637110 MFSD14BQ5SR56 506 aa14.45□□□□□ -0.1
CLN3-257ENST00000637110 CHRDL2Q6WN34 429 aa14.45□□□□□ -0.1
CLN3-257ENST00000637110 CEP126Q9P2H0 1117 aa14.45□□□□□ -0.1
CLN3-257ENST00000637110 UNCXA6NJT0 531 aa14.44□□□□□ -0.1
CLN3-257ENST00000637110 IGF2BP3O00425 579 aaKnown RBP eCLIP14.44□□□□□ -0.1
CLN3-257ENST00000637110 SRGAP3O43295 1099 aa14.44□□□□□ -0.1
CLN3-257ENST00000637110 MYO1BO43795 1136 aa14.44□□□□□ -0.1
CLN3-257ENST00000637110 GNAI2P04899 355 aa14.44□□□□□ -0.1
CLN3-257ENST00000637110 BCAMP50895 628 aa14.44□□□□□ -0.1
CLN3-257ENST00000637110 FKBP1AP62942 108 aaKnown RBP14.44□□□□□ -0.1
CLN3-257ENST00000637110 CRHR2Q13324 411 aa14.44□□□□□ -0.1
CLN3-257ENST00000637110 CFAP100Q494V2 611 aa14.44□□□□□ -0.1
CLN3-257ENST00000637110 TMEM57Q8N5G2 664 aa14.44□□□□□ -0.1
CLN3-257ENST00000637110 VGLL2Q8N8G2 317 aa14.44□□□□□ -0.1
CLN3-257ENST00000637110 TTF2Q9UNY4 1162 aaKnown RBP14.44□□□□□ -0.1
CLN3-257ENST00000637110 PA2G4Q9UQ80 394 aaKnown RBP14.44□□□□□ -0.1
CLN3-257ENST00000637110 FAM205AQ6ZU69 1335 aa14.43□□□□□ -0.1
CLN3-257ENST00000637110 CUL9Q8IWT3 2517 aa14.43□□□□□ -0.1
CLN3-257ENST00000637110 PPP1R12BO60237 982 aaPredicted RBP14.43□□□□□ -0.1
CLN3-257ENST00000637110 CIAO1O76071 339 aa14.43□□□□□ -0.1
CLN3-257ENST00000637110 IL15P40933 162 aaPredicted RBP14.43□□□□□ -0.1
CLN3-257ENST00000637110 ATP2B3Q16720 1220 aa14.43□□□□□ -0.1
CLN3-257ENST00000637110 ATG9AQ7Z3C6 839 aa14.43□□□□□ -0.1
CLN3-257ENST00000637110 FBXO33Q7Z6M2 555 aa14.43□□□□□ -0.1
CLN3-257ENST00000637110 DZIP1LQ8IYY4 767 aaKnown RBP14.43□□□□□ -0.1
CLN3-257ENST00000637110 LPIN2Q92539 896 aa14.43□□□□□ -0.1
CLN3-257ENST00000637110 WNK4Q96J92 1243 aa14.43□□□□□ -0.1
CLN3-257ENST00000637110 FBXO3Q9UK99 471 aa14.43□□□□□ -0.1
CLN3-257ENST00000637110 MAP3K11Q16584 847 aa14.42□□□□□ -0.1
CLN3-257ENST00000637110 ITPRIPQ8IWB1 547 aa14.42□□□□□ -0.1
CLN3-257ENST00000637110 VEZTQ9HBM0 779 aa14.42□□□□□ -0.1
CLN3-257ENST00000637110 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.42□□□□□ -0.1
CLN3-257ENST00000637110 PCDHAC2Q9Y5I4 1007 aa14.42□□□□□ -0.1
CLN3-257ENST00000637110 CLRN2A0PK11 232 aa14.41□□□□□ -0.1
CLN3-257ENST00000637110 FGFR2P21802 821 aa14.41□□□□□ -0.1
CLN3-257ENST00000637110 TBC1D22AQ8WUA7 517 aa14.41□□□□□ -0.1
CLN3-257ENST00000637110 COPRSQ9NQ92 184 aa14.41□□□□□ -0.1
CLN3-257ENST00000637110 GNL3LQ9NVN8 582 aaKnown RBP14.41□□□□□ -0.1
CLN3-257ENST00000637110 RBM27Q9P2N5 1060 aaKnown RBP14.41□□□□□ -0.1
CLN3-257ENST00000637110 PPP2R3BQ9Y5P8 575 aa14.41□□□□□ -0.1
CLN3-257ENST00000637110 ZNF646O15015 1829 aaPredicted RBP14.41□□□□□ -0.1
CLN3-257ENST00000637110 DPF3Q92784 378 aa14.4□□□□□ -0.1
CLN3-257ENST00000637110 PRMT6Q96LA8 375 aaPredicted RBP14.4□□□□□ -0.1
CLN3-257ENST00000637110 DEFB129Q9H1M3 183 aa14.4□□□□□ -0.1
CLN3-257ENST00000637110 SPDYE2BA6NHP3 402 aa14.39□□□□□ -0.11
CLN3-257ENST00000637110 SPDYE6P0CI01 402 aa14.39□□□□□ -0.11
CLN3-257ENST00000637110 CRKP46108 304 aa14.39□□□□□ -0.11
CLN3-257ENST00000637110 G3BP1Q13283 466 aaKnown RBP eCLIP14.39□□□□□ -0.11
CLN3-257ENST00000637110 SUPT20HL1Q3ZLR7 823 aa14.39□□□□□ -0.11
CLN3-257ENST00000637110 MTMR14Q8NCE2 650 aa14.39□□□□□ -0.11
CLN3-257ENST00000637110 ZBED3Q96IU2 234 aaPredicted RBP14.39□□□□□ -0.11
CLN3-257ENST00000637110 CLMNQ96JQ2 1002 aa14.39□□□□□ -0.11
CLN3-257ENST00000637110 PTCH2Q9Y6C5 1203 aa14.39□□□□□ -0.11
CLN3-257ENST00000637110 A0A0C4DFX4 3053 aa14.38□□□□□ -0.11
CLN3-257ENST00000637110 RANBP2P49792 3224 aaKnown RBP14.38□□□□□ -0.11
CLN3-257ENST00000637110 IREB2P48200 963 aaKnown RBP14.38□□□□□ -0.11
CLN3-257ENST00000637110 MNX1P50219 401 aaPredicted RBP14.38□□□□□ -0.11
CLN3-257ENST00000637110 TFCP2Q12800 502 aa14.38□□□□□ -0.11
CLN3-257ENST00000637110 OS9Q13438 667 aaPredicted RBP14.38□□□□□ -0.11
CLN3-257ENST00000637110 WDR66Q8TBY9 1149 aa14.38□□□□□ -0.11
CLN3-257ENST00000637110 NEUROD6Q96NK8 337 aa14.38□□□□□ -0.11
CLN3-257ENST00000637110 TDRD3Q9H7E2 651 aaKnown RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms