RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 SPDYE2Q495Y8 402 aa19.38■□□□□ 0.69
LINC00339-209ENST00000635450 NBPF12Q5TAG4 269 aaPredicted RBP19.38■□□□□ 0.69
LINC00339-209ENST00000635450 TDRD3Q9H7E2 651 aaKnown RBP19.38■□□□□ 0.69
LINC00339-209ENST00000635450 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.38■□□□□ 0.69
LINC00339-209ENST00000635450 RCAN3Q9UKA8 241 aa19.38■□□□□ 0.69
LINC00339-209ENST00000635450 CRKP46108 304 aa19.37■□□□□ 0.69
LINC00339-209ENST00000635450 LDLRAD1Q5T700 205 aa19.37■□□□□ 0.69
LINC00339-209ENST00000635450 VPS37DQ86XT2 251 aa19.37■□□□□ 0.69
LINC00339-209ENST00000635450 YTHDC1Q96MU7 727 aaKnown RBP19.37■□□□□ 0.69
LINC00339-209ENST00000635450 ZNF70Q9UC06 446 aaPredicted RBP19.37■□□□□ 0.69
LINC00339-209ENST00000635450 GNAI2P04899 355 aa19.36■□□□□ 0.69
LINC00339-209ENST00000635450 RASA3Q14644 834 aa19.36■□□□□ 0.69
LINC00339-209ENST00000635450 ITPRIPQ8IWB1 547 aa19.36■□□□□ 0.69
LINC00339-209ENST00000635450 SERPINA10Q9UK55 444 aa19.36■□□□□ 0.69
LINC00339-209ENST00000635450 MYO1BO43795 1136 aa19.35■□□□□ 0.69
LINC00339-209ENST00000635450 CACNB3P54284 484 aa19.35■□□□□ 0.69
LINC00339-209ENST00000635450 DGKZQ13574 1117 aa19.35■□□□□ 0.69
LINC00339-209ENST00000635450 CAVIN4Q5BKX8 364 aa19.35■□□□□ 0.69
LINC00339-209ENST00000635450 ARMC9Q7Z3E5 817 aa19.35■□□□□ 0.69
LINC00339-209ENST00000635450 PPP2R3BQ9Y5P8 575 aa19.35■□□□□ 0.69
LINC00339-209ENST00000635450 TEPSINQ96N21 525 aa19.34■□□□□ 0.69
LINC00339-209ENST00000635450 TCP10L2B9ZVM9 353 aa19.33■□□□□ 0.68
LINC00339-209ENST00000635450 FRAT2O75474 233 aaPredicted RBP19.33■□□□□ 0.68
LINC00339-209ENST00000635450 IFIT1P09914 478 aaKnown RBP19.33■□□□□ 0.68
LINC00339-209ENST00000635450 SLC5A1P13866 664 aa19.33■□□□□ 0.68
LINC00339-209ENST00000635450 MAP3K11Q16584 847 aa19.33■□□□□ 0.68
LINC00339-209ENST00000635450 SPRYD7Q5W111 196 aa19.33■□□□□ 0.68
LINC00339-209ENST00000635450 TMEM39BQ9GZU3 492 aa19.33■□□□□ 0.68
LINC00339-209ENST00000635450 FBXO3Q9UK99 471 aa19.33■□□□□ 0.68
LINC00339-209ENST00000635450 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.33■□□□□ 0.68
LINC00339-209ENST00000635450 MYH2Q9UKX2 1941 aa19.33■□□□□ 0.68
LINC00339-209ENST00000635450 SRGAP3O43295 1099 aa19.32■□□□□ 0.68
LINC00339-209ENST00000635450 TBC1D8O95759 1140 aa19.32■□□□□ 0.68
LINC00339-209ENST00000635450 RLBP1P12271 317 aa19.32■□□□□ 0.68
LINC00339-209ENST00000635450 ADORA1P30542 326 aa19.32■□□□□ 0.68
LINC00339-209ENST00000635450 GJA5P36382 358 aa19.32■□□□□ 0.68
LINC00339-209ENST00000635450 ATP2B3Q16720 1220 aa19.32■□□□□ 0.68
LINC00339-209ENST00000635450 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.32■□□□□ 0.68
LINC00339-209ENST00000635450 LPIN2Q92539 896 aa19.32■□□□□ 0.68
LINC00339-209ENST00000635450 R3HDMLQ9H3Y0 253 aa19.32■□□□□ 0.68
LINC00339-209ENST00000635450 CCDC85CA6NKD9 419 aa19.31■□□□□ 0.68
LINC00339-209ENST00000635450 USP2O75604 605 aaPredicted RBP19.31■□□□□ 0.68
LINC00339-209ENST00000635450 CIAO1O76071 339 aa19.31■□□□□ 0.68
LINC00339-209ENST00000635450 PANK1Q8TE04 598 aa19.31■□□□□ 0.68
LINC00339-209ENST00000635450 WNK4Q96J92 1243 aa19.31■□□□□ 0.68
LINC00339-209ENST00000635450 PHKA1P46020 1223 aa19.3■□□□□ 0.68
LINC00339-209ENST00000635450 TM4SF4P48230 202 aa19.3■□□□□ 0.68
LINC00339-209ENST00000635450 MTX1Q13505 466 aa19.3■□□□□ 0.68
LINC00339-209ENST00000635450 TBC1D22AQ8WUA7 517 aa19.3■□□□□ 0.68
LINC00339-209ENST00000635450 TEKT1Q969V4 418 aa19.3■□□□□ 0.68
LINC00339-209ENST00000635450 AK9Q5TCS8 1911 aa19.29■□□□□ 0.68
LINC00339-209ENST00000635450 PPP1R12BO60237 982 aaPredicted RBP19.29■□□□□ 0.68
LINC00339-209ENST00000635450 DIXDC1Q155Q3 683 aa19.29■□□□□ 0.68
LINC00339-209ENST00000635450 APOBEC3HQ6NTF7 200 aaKnown RBP19.29■□□□□ 0.68
LINC00339-209ENST00000635450 COPRSQ9NQ92 184 aa19.29■□□□□ 0.68
LINC00339-209ENST00000635450 DOCK2Q92608 1830 aa19.28■□□□□ 0.68
LINC00339-209ENST00000635450 ZBTB7BO15156 539 aaPredicted RBP19.28■□□□□ 0.68
LINC00339-209ENST00000635450 PRDX5P30044 214 aa19.28■□□□□ 0.68
LINC00339-209ENST00000635450 IL15P40933 162 aaPredicted RBP19.28■□□□□ 0.68
LINC00339-209ENST00000635450 TNFAIP1Q13829 316 aa19.28■□□□□ 0.68
LINC00339-209ENST00000635450 SUPT20HL1Q3ZLR7 823 aa19.28■□□□□ 0.68
LINC00339-209ENST00000635450 REM2Q8IYK8 340 aaPredicted RBP19.28■□□□□ 0.68
LINC00339-209ENST00000635450 CNKSR2Q8WXI2 1034 aa19.28■□□□□ 0.68
LINC00339-209ENST00000635450 ZDHHC15Q96MV8 337 aa19.28■□□□□ 0.68
LINC00339-209ENST00000635450 CEP126Q9P2H0 1117 aa19.28■□□□□ 0.68
LINC00339-209ENST00000635450 HTTP42858 3142 aa19.27■□□□□ 0.68
LINC00339-209ENST00000635450 IGF2BP3O00425 579 aaKnown RBP eCLIP19.27■□□□□ 0.68
LINC00339-209ENST00000635450 HDLBPQ00341 1268 aaKnown RBP19.27■□□□□ 0.68
LINC00339-209ENST00000635450 ZNF296Q8WUU4 475 aaPredicted RBP19.27■□□□□ 0.68
LINC00339-209ENST00000635450 SLC10A4Q96EP9 437 aa19.27■□□□□ 0.68
LINC00339-209ENST00000635450 ELP3Q9H9T3 547 aa19.27■□□□□ 0.68
LINC00339-209ENST00000635450 IREB2P48200 963 aaKnown RBP19.26■□□□□ 0.67
LINC00339-209ENST00000635450 SREBF2Q12772 1141 aa19.26■□□□□ 0.67
LINC00339-209ENST00000635450 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.26■□□□□ 0.67
LINC00339-209ENST00000635450 CHMP4BQ9H444 224 aaKnown RBP19.26■□□□□ 0.67
LINC00339-209ENST00000635450 C1orf115Q9H7X2 142 aa19.26■□□□□ 0.67
LINC00339-209ENST00000635450 DAGLAQ9Y4D2 1042 aa19.26■□□□□ 0.67
LINC00339-209ENST00000635450 MYO5AQ9Y4I1 1855 aaKnown RBP19.25■□□□□ 0.67
LINC00339-209ENST00000635450 PNMA6EA0A0J9YXQ4 647 aa19.25■□□□□ 0.67
LINC00339-209ENST00000635450 TFCP2Q12800 502 aa19.25■□□□□ 0.67
LINC00339-209ENST00000635450 MVPQ14764 893 aaKnown RBP19.25■□□□□ 0.67
LINC00339-209ENST00000635450 DDX19BQ9UMR2 479 aa19.25■□□□□ 0.67
LINC00339-209ENST00000635450 ZSWIM8A7E2V4 1837 aa19.25■□□□□ 0.67
LINC00339-209ENST00000635450 MAST3O60307 1309 aa19.25■□□□□ 0.67
LINC00339-209ENST00000635450 ZBTB48P10074 688 aaPredicted RBP19.24■□□□□ 0.67
LINC00339-209ENST00000635450 TIMM10P62072 90 aa19.24■□□□□ 0.67
LINC00339-209ENST00000635450 RASGRF1Q13972 1273 aa19.24■□□□□ 0.67
LINC00339-209ENST00000635450 VGLL4Q14135 290 aa19.24■□□□□ 0.67
LINC00339-209ENST00000635450 CCDC102BQ68D86 513 aa19.24■□□□□ 0.67
LINC00339-209ENST00000635450 HHIPL2Q6UWX4 724 aa19.24■□□□□ 0.67
LINC00339-209ENST00000635450 CTU1Q7Z7A3 348 aaKnown RBP19.24■□□□□ 0.67
LINC00339-209ENST00000635450 IFNL1Q8IU54 200 aa19.24■□□□□ 0.67
LINC00339-209ENST00000635450 ANKRD13AQ8IZ07 590 aa19.24■□□□□ 0.67
LINC00339-209ENST00000635450 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.24■□□□□ 0.67
LINC00339-209ENST00000635450 WDR66Q8TBY9 1149 aa19.24■□□□□ 0.67
LINC00339-209ENST00000635450 COG6Q9Y2V7 657 aa19.24■□□□□ 0.67
LINC00339-209ENST00000635450 SUGT1Q9Y2Z0 365 aa19.24■□□□□ 0.67
LINC00339-209ENST00000635450 RPAP1Q9BWH6 1393 aaPredicted RBP19.23■□□□□ 0.67
LINC00339-209ENST00000635450 MANSC4A6NHS7 340 aaPredicted RBP19.23■□□□□ 0.67
LINC00339-209ENST00000635450 GPR25O00155 361 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms