RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 CATIPQ7Z7H3 387 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 IFNKQ9P0W0 207 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 MAN1A2O60476 641 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 APOBRQ0VD83 1088 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 TMTC2Q8N394 836 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 GUCA1BQ9UMX6 200 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 PCF11O94913 1555 aaKnown RBP9.82□□□□□ -0.84
TTC28-208ENST00000612946 KDM5DQ9BY66 1539 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 TMEM132AQ24JP5 1023 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 TMX1Q9H3N1 280 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 ZBTB12Q9Y330 459 aaPredicted RBP9.81□□□□□ -0.84
TTC28-208ENST00000612946 CCDC170Q8IYT3 715 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 MSANTD4Q8NCY6 345 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 ZHX3Q9H4I2 956 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 OPHN1O60890 802 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 IQCA1Q86XH1 822 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 LZICQ8WZA0 190 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.81□□□□□ -0.84
TTC28-208ENST00000612946 TROVE2P10155 538 aaKnown RBP eCLIP9.81□□□□□ -0.84
TTC28-208ENST00000612946 TTF1Q15361 905 aaPredicted RBP9.81□□□□□ -0.84
TTC28-208ENST00000612946 RILPL1Q5EBL4 403 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 GCC2Q8IWJ2 1684 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 PPP4R3AQ6IN85 833 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 ARHGAP5Q13017 1502 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 KRT13P13646 458 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 UBA7P41226 1012 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 SPDL1Q96EA4 605 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 IFT81Q8WYA0 676 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 RBSNQ9H1K0 784 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 SPTLC2O15270 562 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 GFAPP14136 432 aa9.81□□□□□ -0.84
TTC28-208ENST00000612946 HMGB2P26583 209 aaKnown RBP9.81□□□□□ -0.84
TTC28-208ENST00000612946 SPECC1L-ADORA2AF8WAN1 911 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 TRIM58Q8NG06 486 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 HAUS1Q96CS2 278 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 CCDC169A6NNP5 214 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 MYO1CO00159 1063 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 PPP1R7Q15435 360 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 LZTFL1Q9NQ48 299 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 AIDAQ96BJ3 306 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 NAIPQ13075 1403 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 GNGT1P63211 74 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 TRAF1Q13077 416 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 UIMC1Q96RL1 719 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 CFTRP13569 1480 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 VIRMAQ69YN4 1812 aaKnown RBP9.8□□□□□ -0.84
TTC28-208ENST00000612946 AEBP2Q6ZN18 517 aaPredicted RBP9.8□□□□□ -0.84
TTC28-208ENST00000612946 KCNK9Q9NPC2 374 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 IQSEC3Q9UPP2 1182 aaPredicted RBP9.8□□□□□ -0.84
TTC28-208ENST00000612946 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.8□□□□□ -0.84
TTC28-208ENST00000612946 LIG3P49916 1009 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 NBPF14Q5TI25 921 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 CPLX3Q8WVH0 158 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 REREQ9P2R6 1566 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 PDE1CQ14123 709 aaPredicted RBP9.8□□□□□ -0.84
TTC28-208ENST00000612946 PLEKHO1Q53GL0 409 aaPredicted RBP9.8□□□□□ -0.84
TTC28-208ENST00000612946 CCDC63Q8NA47 563 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 ECHDC1Q9NTX5 307 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 TMPOP42166 694 aaKnown RBP9.8□□□□□ -0.84
TTC28-208ENST00000612946 SDCCAG8Q86SQ7 713 aaPredicted RBP9.8□□□□□ -0.84
TTC28-208ENST00000612946 LEO1Q8WVC0 666 aaPredicted RBP9.8□□□□□ -0.84
TTC28-208ENST00000612946 MAIP1Q8WWC4 291 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 SSH1Q8WYL5 1049 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 MIS18AQ9NYP9 233 aa9.8□□□□□ -0.84
TTC28-208ENST00000612946 UBXN1Q04323 297 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 ANKRD20A3Q5VUR7 823 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 TCP11Q8WWU5 503 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 CADPSQ9ULU8 1353 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 PABPN1LA6NDY0 278 aaKnown RBP9.79□□□□□ -0.84
TTC28-208ENST00000612946 SPTY2D1Q68D10 685 aaPredicted RBP9.79□□□□□ -0.84
TTC28-208ENST00000612946 JPH2Q9BR39 696 aaPredicted RBP9.79□□□□□ -0.84
TTC28-208ENST00000612946 CNNM2Q9H8M5 875 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 NSD3Q9BZ95 1437 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 TRIM27P14373 513 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 NBPF20Q3BBV1 942 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 SECISBP2LQ93073 1101 aaKnown RBP9.79□□□□□ -0.84
TTC28-208ENST00000612946 ANKRD27Q96NW4 1050 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 FGFR1OP2Q9NVK5 253 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 PUF60Q9UHX1 559 aaKnown RBP9.79□□□□□ -0.84
TTC28-208ENST00000612946 SAR1BQ9Y6B6 198 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 PIK3C2GO75747 1445 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 BIN1O00499 593 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 IGSF22Q8N9C0 903 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 BCAS4Q8TDM0 211 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 TSR2Q969E8 191 aaKnown RBP9.79□□□□□ -0.84
TTC28-208ENST00000612946 STAT6P42226 847 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 SRGAP1Q7Z6B7 1085 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 ANKRD20A4Q4UJ75 823 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 ANKRD20A8PQ5CZ79 823 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 ANKRD20A2Q5SQ80 823 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 ANKRD20A1Q5TYW2 823 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 GSDMBQ8TAX9 411 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 PIP4K2CQ8TBX8 421 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 SOS1Q07889 1333 aaPredicted RBP9.79□□□□□ -0.84
TTC28-208ENST00000612946 NOP14P78316 857 aaKnown RBP9.79□□□□□ -0.84
TTC28-208ENST00000612946 DDX41Q9UJV9 622 aaKnown RBP9.79□□□□□ -0.84
TTC28-208ENST00000612946 PARD3Q8TEW0 1356 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 SESN3P58005 492 aa9.79□□□□□ -0.84
TTC28-208ENST00000612946 ZC3H6P61129 1189 aaKnown RBP9.79□□□□□ -0.84
TTC28-208ENST00000612946 TEX9Q8N6V9 391 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms