RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 IGF2BP3O00425 579 aaKnown RBP eCLIP19.77■□□□□ 0.76
SHKBP1-228ENST00000602239 ZBTB48P10074 688 aaPredicted RBP19.77■□□□□ 0.76
SHKBP1-228ENST00000602239 INHBEP58166 350 aa19.77■□□□□ 0.76
SHKBP1-228ENST00000602239 PKN2Q16513 984 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-228ENST00000602239 CAVIN4Q5BKX8 364 aa19.77■□□□□ 0.76
SHKBP1-228ENST00000602239 UNCXA6NJT0 531 aa19.76■□□□□ 0.75
SHKBP1-228ENST00000602239 FKTNO75072 461 aa19.76■□□□□ 0.75
SHKBP1-228ENST00000602239 FRAT2O75474 233 aaPredicted RBP19.76■□□□□ 0.75
SHKBP1-228ENST00000602239 IREB2P48200 963 aaKnown RBP19.76■□□□□ 0.75
SHKBP1-228ENST00000602239 RFX5P48382 616 aaPredicted RBP19.76■□□□□ 0.75
SHKBP1-228ENST00000602239 TRMT2AQ8IZ69 625 aaKnown RBP19.76■□□□□ 0.75
SHKBP1-228ENST00000602239 TMEM39BQ9GZU3 492 aa19.76■□□□□ 0.75
SHKBP1-228ENST00000602239 FGFR2P21802 821 aa19.75■□□□□ 0.75
SHKBP1-228ENST00000602239 TNFAIP1Q13829 316 aa19.75■□□□□ 0.75
SHKBP1-228ENST00000602239 ANKRD13AQ8IZ07 590 aa19.75■□□□□ 0.75
SHKBP1-228ENST00000602239 ALDH1A1P00352 501 aa19.74■□□□□ 0.75
SHKBP1-228ENST00000602239 CACNB3P54284 484 aa19.74■□□□□ 0.75
SHKBP1-228ENST00000602239 ALDH1L2Q3SY69 923 aa19.74■□□□□ 0.75
SHKBP1-228ENST00000602239 PTPN18Q99952 460 aa19.74■□□□□ 0.75
SHKBP1-228ENST00000602239 ELP3Q9H9T3 547 aa19.74■□□□□ 0.75
SHKBP1-228ENST00000602239 SMC4Q9NTJ3 1288 aa19.74■□□□□ 0.75
SHKBP1-228ENST00000602239 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.73■□□□□ 0.75
SHKBP1-228ENST00000602239 TBC1D22AQ8WUA7 517 aa19.73■□□□□ 0.75
SHKBP1-228ENST00000602239 CNKSR2Q8WXI2 1034 aa19.73■□□□□ 0.75
SHKBP1-228ENST00000602239 EYA2O00167 538 aa19.72■□□□□ 0.75
SHKBP1-228ENST00000602239 HDLBPQ00341 1268 aaKnown RBP19.72■□□□□ 0.75
SHKBP1-228ENST00000602239 PUM3Q15397 648 aaKnown RBP19.72■□□□□ 0.75
SHKBP1-228ENST00000602239 ATG9AQ7Z3C6 839 aa19.72■□□□□ 0.75
SHKBP1-228ENST00000602239 TEKT1Q969V4 418 aa19.72■□□□□ 0.75
SHKBP1-228ENST00000602239 NOB1Q9ULX3 412 aaKnown RBP19.72■□□□□ 0.75
SHKBP1-228ENST00000602239 IFIT1P09914 478 aaKnown RBP19.71■□□□□ 0.75
SHKBP1-228ENST00000602239 APOBEC3HQ6NTF7 200 aaKnown RBP19.71■□□□□ 0.75
SHKBP1-228ENST00000602239 FBXO46Q6PJ61 603 aaPredicted RBP19.71■□□□□ 0.75
SHKBP1-228ENST00000602239 OPTNQ96CV9 577 aa19.71■□□□□ 0.75
SHKBP1-228ENST00000602239 MS4A4AQ96JQ5 239 aa19.71■□□□□ 0.75
SHKBP1-228ENST00000602239 ARAP2Q8WZ64 1704 aa19.71■□□□□ 0.75
SHKBP1-228ENST00000602239 TESPA1A2RU30 521 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-228ENST00000602239 TNNI2P48788 182 aa19.7■□□□□ 0.74
SHKBP1-228ENST00000602239 CRHR2Q13324 411 aa19.7■□□□□ 0.74
SHKBP1-228ENST00000602239 ZDHHC15Q96MV8 337 aa19.7■□□□□ 0.74
SHKBP1-228ENST00000602239 MRIQ9BWK5 157 aa19.7■□□□□ 0.74
SHKBP1-228ENST00000602239 SIL1Q9H173 461 aa19.7■□□□□ 0.74
SHKBP1-228ENST00000602239 VGLL4Q14135 290 aa19.69■□□□□ 0.74
SHKBP1-228ENST00000602239 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.69■□□□□ 0.74
SHKBP1-228ENST00000602239 LPIN2Q92539 896 aa19.69■□□□□ 0.74
SHKBP1-228ENST00000602239 KIF16BQ96L93 1317 aa19.69■□□□□ 0.74
SHKBP1-228ENST00000602239 UBTFL1P0CB47 393 aaPredicted RBP19.68■□□□□ 0.74
SHKBP1-228ENST00000602239 SLC5A1P13866 664 aa19.68■□□□□ 0.74
SHKBP1-228ENST00000602239 MAP3K9P80192 1104 aa19.68■□□□□ 0.74
SHKBP1-228ENST00000602239 CAP1Q01518 475 aa19.68■□□□□ 0.74
SHKBP1-228ENST00000602239 OTOP1Q7RTM1 612 aa19.68■□□□□ 0.74
SHKBP1-228ENST00000602239 TRIM17Q9Y577 477 aa19.68■□□□□ 0.74
SHKBP1-228ENST00000602239 OTOFQ9HC10 1997 aa19.68■□□□□ 0.74
SHKBP1-228ENST00000602239 OTUD7BQ6GQQ9 843 aa19.67■□□□□ 0.74
SHKBP1-228ENST00000602239 SUGT1Q9Y2Z0 365 aa19.67■□□□□ 0.74
SHKBP1-228ENST00000602239 LAMB1P07942 1786 aa19.67■□□□□ 0.74
SHKBP1-228ENST00000602239 HTTP42858 3142 aa19.67■□□□□ 0.74
SHKBP1-228ENST00000602239 PDE4DIPQ5VU43 2346 aa19.67■□□□□ 0.74
SHKBP1-228ENST00000602239 HHIPL2Q6UWX4 724 aa19.66■□□□□ 0.74
SHKBP1-228ENST00000602239 CD99L2Q8TCZ2 262 aa19.66■□□□□ 0.74
SHKBP1-228ENST00000602239 BRI3BPQ8WY22 251 aa19.66■□□□□ 0.74
SHKBP1-228ENST00000602239 PA2G4Q9UQ80 394 aaKnown RBP19.66■□□□□ 0.74
SHKBP1-228ENST00000602239 LRRFIP2Q9Y608 721 aaKnown RBP19.66■□□□□ 0.74
SHKBP1-228ENST00000602239 FAM83AQ86UY5 434 aa19.65■□□□□ 0.74
SHKBP1-228ENST00000602239 WDR66Q8TBY9 1149 aa19.65■□□□□ 0.74
SHKBP1-228ENST00000602239 ZKSCAN4Q969J2 545 aaPredicted RBP19.65■□□□□ 0.74
SHKBP1-228ENST00000602239 OTUD5Q96G74 571 aa19.65■□□□□ 0.74
SHKBP1-228ENST00000602239 CEP126Q9P2H0 1117 aa19.65■□□□□ 0.74
SHKBP1-228ENST00000602239 CIAO1O76071 339 aa19.64■□□□□ 0.73
SHKBP1-228ENST00000602239 CT47B1P0C2W7 299 aaPredicted RBP19.64■□□□□ 0.73
SHKBP1-228ENST00000602239 ATP2B3Q16720 1220 aa19.64■□□□□ 0.73
SHKBP1-228ENST00000602239 FKBP1CQ5VVH2 108 aa19.64■□□□□ 0.73
SHKBP1-228ENST00000602239 MEIS3Q99687 375 aa19.64■□□□□ 0.73
SHKBP1-228ENST00000602239 TMOD2Q9NZR1 351 aa19.64■□□□□ 0.73
SHKBP1-228ENST00000602239 CSADQ9Y600 493 aa19.64■□□□□ 0.73
SHKBP1-228ENST00000602239 MAST3O60307 1309 aa19.64■□□□□ 0.73
SHKBP1-228ENST00000602239 CCL15-CCL14A0A0B4J2E2 113 aa19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 PRDX5P30044 214 aa19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 GTF2A2P52657 109 aa19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 RARSP54136 660 aaKnown RBP19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 SP3Q02447 781 aa19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 DIXDC1Q155Q3 683 aa19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 CCL15Q16663 113 aa19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 MIGA2Q7L4E1 593 aa19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 FAM43AQ8N2R8 423 aa19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 WRNIP1Q96S55 665 aa19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 API5Q9BZZ5 524 aaKnown RBP19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 FBXO3Q9UK99 471 aa19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 SNCAIPQ9Y6H5 919 aa19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 CENPFP49454 3210 aa19.63■□□□□ 0.73
SHKBP1-228ENST00000602239 PHKA1P46020 1223 aa19.62■□□□□ 0.73
SHKBP1-228ENST00000602239 CDC42EP5Q6NZY7 148 aa19.62■□□□□ 0.73
SHKBP1-228ENST00000602239 ERO1AQ96HE7 468 aa19.62■□□□□ 0.73
SHKBP1-228ENST00000602239 DAGLAQ9Y4D2 1042 aa19.62■□□□□ 0.73
SHKBP1-228ENST00000602239 SPDYE5A6NIY4 337 aa19.61■□□□□ 0.73
SHKBP1-228ENST00000602239 SLC34A2O95436 690 aa19.61■□□□□ 0.73
SHKBP1-228ENST00000602239 ADORA1P30542 326 aa19.61■□□□□ 0.73
SHKBP1-228ENST00000602239 TCP10Q12799 353 aa19.61■□□□□ 0.73
SHKBP1-228ENST00000602239 ERO1BQ86YB8 467 aa19.61■□□□□ 0.73
SHKBP1-228ENST00000602239 PTPN22Q9Y2R2 807 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms