RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 TEKT1Q969V4 418 aa12.04□□□□□ -0.48
VRK3-224ENST00000601849 R3HDMLQ9H3Y0 253 aa12.04□□□□□ -0.48
VRK3-224ENST00000601849 ELP3Q9H9T3 547 aa12.04□□□□□ -0.48
VRK3-224ENST00000601849 PTPN22Q9Y2R2 807 aa12.04□□□□□ -0.48
VRK3-224ENST00000601849 PCDHAC2Q9Y5I4 1007 aa12.04□□□□□ -0.48
VRK3-224ENST00000601849 TESPA1A2RU30 521 aaPredicted RBP12.03□□□□□ -0.48
VRK3-224ENST00000601849 CHAF1AQ13111 956 aaPredicted RBP12.03□□□□□ -0.48
VRK3-224ENST00000601849 CRHR2Q13324 411 aa12.03□□□□□ -0.48
VRK3-224ENST00000601849 KIF22Q14807 665 aa12.03□□□□□ -0.48
VRK3-224ENST00000601849 MRIQ9BWK5 157 aa12.03□□□□□ -0.48
VRK3-224ENST00000601849 MAST3O60307 1309 aa12.03□□□□□ -0.48
VRK3-224ENST00000601849 PDE8BO95263 885 aa12.02□□□□□ -0.49
VRK3-224ENST00000601849 IFIT1P09914 478 aaKnown RBP12.02□□□□□ -0.49
VRK3-224ENST00000601849 CD99L2Q8TCZ2 262 aa12.02□□□□□ -0.49
VRK3-224ENST00000601849 SUCLG2Q96I99 432 aa12.02□□□□□ -0.49
VRK3-224ENST00000601849 SUGT1Q9Y2Z0 365 aa12.02□□□□□ -0.49
VRK3-224ENST00000601849 RIPOR2Q9Y4F9 1068 aa12.02□□□□□ -0.49
VRK3-224ENST00000601849 CCL15-CCL14A0A0B4J2E2 113 aa12.01□□□□□ -0.49
VRK3-224ENST00000601849 NBPF7P0C2Y1 421 aaPredicted RBP12.01□□□□□ -0.49
VRK3-224ENST00000601849 TAF1CQ15572 869 aaPredicted RBP12.01□□□□□ -0.49
VRK3-224ENST00000601849 CCL15Q16663 113 aa12.01□□□□□ -0.49
VRK3-224ENST00000601849 DCAF15Q66K64 600 aa12.01□□□□□ -0.49
VRK3-224ENST00000601849 FBXO33Q7Z6M2 555 aa12.01□□□□□ -0.49
VRK3-224ENST00000601849 PUS3Q9BZE2 481 aaKnown RBP12.01□□□□□ -0.49
VRK3-224ENST00000601849 HDAC5Q9UQL6 1122 aa12.01□□□□□ -0.49
VRK3-224ENST00000601849 PTPRCP08575 1304 aa12.01□□□□□ -0.49
VRK3-224ENST00000601849 ZNF646O15015 1829 aaPredicted RBP12□□□□□ -0.49
VRK3-224ENST00000601849 ECM29Q5VYK3 1845 aa12□□□□□ -0.49
VRK3-224ENST00000601849 ZNF316A6NFI3 1004 aaPredicted RBP12□□□□□ -0.49
VRK3-224ENST00000601849 CETPP11597 493 aa12□□□□□ -0.49
VRK3-224ENST00000601849 VGLL4Q14135 290 aa12□□□□□ -0.49
VRK3-224ENST00000601849 RABL6Q3YEC7 729 aaPredicted RBP12□□□□□ -0.49
VRK3-224ENST00000601849 SLC9C1Q4G0N8 1177 aa12□□□□□ -0.49
VRK3-224ENST00000601849 FKBP1CQ5VVH2 108 aa12□□□□□ -0.49
VRK3-224ENST00000601849 PPP1R3FQ6ZSY5 799 aaPredicted RBP12□□□□□ -0.49
VRK3-224ENST00000601849 FAM83AQ86UY5 434 aa12□□□□□ -0.49
VRK3-224ENST00000601849 OTUD5Q96G74 571 aa12□□□□□ -0.49
VRK3-224ENST00000601849 PTPN18Q99952 460 aa12□□□□□ -0.49
VRK3-224ENST00000601849 TMEM39BQ9GZU3 492 aa12□□□□□ -0.49
VRK3-224ENST00000601849 BICC1Q9H694 974 aaKnown RBP12□□□□□ -0.49
VRK3-224ENST00000601849 ZCCHC17Q9NP64 241 aaKnown RBP12□□□□□ -0.49
VRK3-224ENST00000601849 SPINK5Q9NQ38 1064 aaPredicted RBP12□□□□□ -0.49
VRK3-224ENST00000601849 IQSEC3Q9UPP2 1182 aaPredicted RBP12□□□□□ -0.49
VRK3-224ENST00000601849 UTYO14607 1347 aa12□□□□□ -0.49
VRK3-224ENST00000601849 PDE4DIPQ5VU43 2346 aa12□□□□□ -0.49
VRK3-224ENST00000601849 GNRH1P01148 92 aa11.99□□□□□ -0.49
VRK3-224ENST00000601849 GJA5P36382 358 aa11.99□□□□□ -0.49
VRK3-224ENST00000601849 SNAPC2Q13487 334 aa11.99□□□□□ -0.49
VRK3-224ENST00000601849 PUM3Q15397 648 aaKnown RBP11.99□□□□□ -0.49
VRK3-224ENST00000601849 ERO1BQ86YB8 467 aa11.99□□□□□ -0.49
VRK3-224ENST00000601849 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.99□□□□□ -0.49
VRK3-224ENST00000601849 WDR66Q8TBY9 1149 aa11.99□□□□□ -0.49
VRK3-224ENST00000601849 MS4A4AQ96JQ5 239 aa11.99□□□□□ -0.49
VRK3-224ENST00000601849 ZDHHC15Q96MV8 337 aa11.99□□□□□ -0.49
VRK3-224ENST00000601849 TEPSINQ96N21 525 aa11.99□□□□□ -0.49
VRK3-224ENST00000601849 SSC5DA1L4H1 1573 aa11.99□□□□□ -0.49
VRK3-224ENST00000601849 KIF16BQ96L93 1317 aa11.98□□□□□ -0.49
VRK3-224ENST00000601849 SLC5A1P13866 664 aa11.98□□□□□ -0.49
VRK3-224ENST00000601849 PRMT2P55345 433 aa11.98□□□□□ -0.49
VRK3-224ENST00000601849 SLC4A8Q2Y0W8 1093 aa11.98□□□□□ -0.49
VRK3-224ENST00000601849 LRRC24Q50LG9 513 aa11.98□□□□□ -0.49
VRK3-224ENST00000601849 HHIPL2Q6UWX4 724 aa11.98□□□□□ -0.49
VRK3-224ENST00000601849 BRI3BPQ8WY22 251 aa11.98□□□□□ -0.49
VRK3-224ENST00000601849 ARMC5Q96C12 935 aa11.98□□□□□ -0.49
VRK3-224ENST00000601849 KAZALD1Q96I82 304 aa11.98□□□□□ -0.49
VRK3-224ENST00000601849 WRNIP1Q96S55 665 aa11.98□□□□□ -0.49
VRK3-224ENST00000601849 ZNF341Q9BYN7 854 aa11.98□□□□□ -0.49
VRK3-224ENST00000601849 GNL3LQ9NVN8 582 aaKnown RBP11.98□□□□□ -0.49
VRK3-224ENST00000601849 CENPFP49454 3210 aa11.98□□□□□ -0.49
VRK3-224ENST00000601849 AOX1Q06278 1338 aa11.97□□□□□ -0.49
VRK3-224ENST00000601849 SPDYE5A6NIY4 337 aa11.97□□□□□ -0.49
VRK3-224ENST00000601849 E9PSI1 815 aa11.97□□□□□ -0.49
VRK3-224ENST00000601849 TLR2O60603 784 aa11.97□□□□□ -0.49
VRK3-224ENST00000601849 HOXD10P28358 340 aa11.97□□□□□ -0.49
VRK3-224ENST00000601849 BCAMP50895 628 aa11.97□□□□□ -0.49
VRK3-224ENST00000601849 PPATQ06203 517 aa11.97□□□□□ -0.49
VRK3-224ENST00000601849 MRPL50Q8N5N7 158 aaKnown RBP11.97□□□□□ -0.49
VRK3-224ENST00000601849 LPIN2Q92539 896 aa11.97□□□□□ -0.49
VRK3-224ENST00000601849 POTEFA5A3E0 1075 aa11.96□□□□□ -0.49
VRK3-224ENST00000601849 PPIL2Q13356 520 aa11.96□□□□□ -0.49
VRK3-224ENST00000601849 FAM151AQ8WW52 585 aa11.96□□□□□ -0.49
VRK3-224ENST00000601849 ZKSCAN4Q969J2 545 aaPredicted RBP11.96□□□□□ -0.49
VRK3-224ENST00000601849 FBXO3Q9UK99 471 aa11.96□□□□□ -0.49
VRK3-224ENST00000601849 EYA2O00167 538 aa11.95□□□□□ -0.5
VRK3-224ENST00000601849 EN2P19622 333 aaPredicted RBP11.95□□□□□ -0.5
VRK3-224ENST00000601849 CACNB3P54284 484 aa11.95□□□□□ -0.5
VRK3-224ENST00000601849 FAM43AQ8N2R8 423 aa11.95□□□□□ -0.5
VRK3-224ENST00000601849 CNKSR2Q8WXI2 1034 aa11.95□□□□□ -0.5
VRK3-224ENST00000601849 ZNF333Q96JL9 665 aa11.95□□□□□ -0.5
VRK3-224ENST00000601849 CEP126Q9P2H0 1117 aa11.95□□□□□ -0.5
VRK3-224ENST00000601849 IRF6O14896 467 aa11.94□□□□□ -0.5
VRK3-224ENST00000601849 LDHBP07195 334 aaKnown RBP11.94□□□□□ -0.5
VRK3-224ENST00000601849 ALDH1L2Q3SY69 923 aa11.94□□□□□ -0.5
VRK3-224ENST00000601849 APOBEC3HQ6NTF7 200 aaKnown RBP11.94□□□□□ -0.5
VRK3-224ENST00000601849 MIGA2Q7L4E1 593 aa11.94□□□□□ -0.5
VRK3-224ENST00000601849 CDAN1Q8IWY9 1227 aa11.94□□□□□ -0.5
VRK3-224ENST00000601849 SLF2Q8IX21 1173 aa11.94□□□□□ -0.5
VRK3-224ENST00000601849 ZGPATQ8N5A5 531 aaKnown RBP11.94□□□□□ -0.5
VRK3-224ENST00000601849 ANKRD44Q8N8A2 993 aa11.94□□□□□ -0.5
VRK3-224ENST00000601849 VGLL2Q8N8G2 317 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms