RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 PTPN12Q05209 780 aaKnown RBP10.91□□□□□ -0.66
TRIM28-214ENST00000600840 SREBF2Q12772 1141 aa10.91□□□□□ -0.66
TRIM28-214ENST00000600840 CCDC57Q2TAC2 916 aa10.91□□□□□ -0.66
TRIM28-214ENST00000600840 LRRC24Q50LG9 513 aa10.91□□□□□ -0.66
TRIM28-214ENST00000600840 OGFOD1Q8N543 542 aa10.91□□□□□ -0.66
TRIM28-214ENST00000600840 CFHR5Q9BXR6 569 aa10.91□□□□□ -0.66
TRIM28-214ENST00000600840 RIPOR2Q9Y4F9 1068 aa10.91□□□□□ -0.66
TRIM28-214ENST00000600840 PCDHB15Q9Y5E8 787 aa10.91□□□□□ -0.66
TRIM28-214ENST00000600840 LRRFIP2Q9Y608 721 aaKnown RBP10.91□□□□□ -0.66
TRIM28-214ENST00000600840 ECM29Q5VYK3 1845 aa10.91□□□□□ -0.66
TRIM28-214ENST00000600840 KIAA0100Q14667 2235 aaKnown RBP10.9□□□□□ -0.66
TRIM28-214ENST00000600840 GYG1P46976 350 aa10.9□□□□□ -0.66
TRIM28-214ENST00000600840 POLA2Q14181 598 aa10.9□□□□□ -0.66
TRIM28-214ENST00000600840 GRIK5Q16478 980 aa10.9□□□□□ -0.66
TRIM28-214ENST00000600840 KLHDC4Q8TBB5 520 aa10.9□□□□□ -0.66
TRIM28-214ENST00000600840 CD99L2Q8TCZ2 262 aa10.9□□□□□ -0.66
TRIM28-214ENST00000600840 PRMT6Q96LA8 375 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-214ENST00000600840 CNNM1Q9NRU3 951 aa10.9□□□□□ -0.66
TRIM28-214ENST00000600840 LAMB1P07942 1786 aa10.9□□□□□ -0.67
TRIM28-214ENST00000600840 PNMA6EA0A0J9YXQ4 647 aa10.89□□□□□ -0.67
TRIM28-214ENST00000600840 H0YGN5 161 aa10.89□□□□□ -0.67
TRIM28-214ENST00000600840 AAMPQ13685 434 aa10.89□□□□□ -0.67
TRIM28-214ENST00000600840 TAF7LQ5H9L4 462 aa10.89□□□□□ -0.67
TRIM28-214ENST00000600840 SPRYD7Q5W111 196 aa10.89□□□□□ -0.67
TRIM28-214ENST00000600840 CEP85Q6P2H3 762 aa10.89□□□□□ -0.67
TRIM28-214ENST00000600840 TDRD7Q8NHU6 1098 aaKnown RBP10.89□□□□□ -0.67
TRIM28-214ENST00000600840 SSH3Q8TE77 659 aa10.89□□□□□ -0.67
TRIM28-214ENST00000600840 OTUD5Q96G74 571 aa10.89□□□□□ -0.67
TRIM28-214ENST00000600840 FAM84BQ96KN1 310 aaPredicted RBP10.89□□□□□ -0.67
TRIM28-214ENST00000600840 C1orf115Q9H7X2 142 aa10.89□□□□□ -0.67
TRIM28-214ENST00000600840 PTPN22Q9Y2R2 807 aa10.89□□□□□ -0.67
TRIM28-214ENST00000600840 MKI67P46013 3256 aaKnown RBP10.89□□□□□ -0.67
TRIM28-214ENST00000600840 SSC5DA1L4H1 1573 aa10.89□□□□□ -0.67
TRIM28-214ENST00000600840 CLRN2A0PK11 232 aa10.88□□□□□ -0.67
TRIM28-214ENST00000600840 IGF2BP3O00425 579 aaKnown RBP eCLIP10.88□□□□□ -0.67
TRIM28-214ENST00000600840 UBE4AQ14139 1066 aa10.88□□□□□ -0.67
TRIM28-214ENST00000600840 CFAP100Q494V2 611 aa10.88□□□□□ -0.67
TRIM28-214ENST00000600840 ZNF804AQ7Z570 1209 aa10.88□□□□□ -0.67
TRIM28-214ENST00000600840 RPAP2Q8IXW5 612 aaPredicted RBP10.88□□□□□ -0.67
TRIM28-214ENST00000600840 ARMC5Q96C12 935 aa10.88□□□□□ -0.67
TRIM28-214ENST00000600840 CHMP4BQ9H444 224 aaKnown RBP10.88□□□□□ -0.67
TRIM28-214ENST00000600840 IQSEC3Q9UPP2 1182 aaPredicted RBP10.88□□□□□ -0.67
TRIM28-214ENST00000600840 HDAC5Q9UQL6 1122 aa10.88□□□□□ -0.67
TRIM28-214ENST00000600840 FAM205AQ6ZU69 1335 aa10.87□□□□□ -0.67
TRIM28-214ENST00000600840 ZSWIM8A7E2V4 1837 aa10.87□□□□□ -0.67
TRIM28-214ENST00000600840 MYCP01106 439 aaPredicted RBP10.87□□□□□ -0.67
TRIM28-214ENST00000600840 DLGAP5Q15398 846 aa10.87□□□□□ -0.67
TRIM28-214ENST00000600840 CHRDL2Q6WN34 429 aa10.87□□□□□ -0.67
TRIM28-214ENST00000600840 IFNL1Q8IU54 200 aa10.87□□□□□ -0.67
TRIM28-214ENST00000600840 VGLL2Q8N8G2 317 aa10.87□□□□□ -0.67
TRIM28-214ENST00000600840 MTMR14Q8NCE2 650 aa10.87□□□□□ -0.67
TRIM28-214ENST00000600840 SLC17A8Q8NDX2 589 aa10.87□□□□□ -0.67
TRIM28-214ENST00000600840 DEFB129Q9H1M3 183 aa10.87□□□□□ -0.67
TRIM28-214ENST00000600840 COPRSQ9NQ92 184 aa10.87□□□□□ -0.67
TRIM28-214ENST00000600840 SPDYE2BA6NHP3 402 aa10.86□□□□□ -0.67
TRIM28-214ENST00000600840 SPDYE6P0CI01 402 aa10.86□□□□□ -0.67
TRIM28-214ENST00000600840 HIBADHP31937 336 aaKnown RBP10.86□□□□□ -0.67
TRIM28-214ENST00000600840 NF2P35240 595 aa10.86□□□□□ -0.67
TRIM28-214ENST00000600840 FKBP1AP62942 108 aaKnown RBP10.86□□□□□ -0.67
TRIM28-214ENST00000600840 LDLRAD1Q5T700 205 aa10.86□□□□□ -0.67
TRIM28-214ENST00000600840 NBPF12Q5TAG4 269 aaPredicted RBP10.86□□□□□ -0.67
TRIM28-214ENST00000600840 FBXO33Q7Z6M2 555 aa10.86□□□□□ -0.67
TRIM28-214ENST00000600840 APOBEC3FQ8IUX4 373 aaKnown RBP10.86□□□□□ -0.67
TRIM28-214ENST00000600840 CDAN1Q8IWY9 1227 aa10.86□□□□□ -0.67
TRIM28-214ENST00000600840 ANGEL1Q9UNK9 670 aaKnown RBP10.86□□□□□ -0.67
TRIM28-214ENST00000600840 NOP58Q9Y2X3 529 aaKnown RBP10.86□□□□□ -0.67
TRIM28-214ENST00000600840 ARAP2Q8WZ64 1704 aa10.86□□□□□ -0.67
TRIM28-214ENST00000600840 ALDH1A1P00352 501 aa10.85□□□□□ -0.67
TRIM28-214ENST00000600840 IGHDP01880 384 aa10.85□□□□□ -0.67
TRIM28-214ENST00000600840 MMP14P50281 582 aa10.85□□□□□ -0.67
TRIM28-214ENST00000600840 BCAMP50895 628 aa10.85□□□□□ -0.67
TRIM28-214ENST00000600840 CRHR2Q13324 411 aa10.85□□□□□ -0.67
TRIM28-214ENST00000600840 MFSD14BQ5SR56 506 aa10.85□□□□□ -0.67
TRIM28-214ENST00000600840 ATG9AQ7Z3C6 839 aa10.85□□□□□ -0.67
TRIM28-214ENST00000600840 ARMC9Q7Z3E5 817 aa10.85□□□□□ -0.67
TRIM28-214ENST00000600840 ERO1AQ96HE7 468 aa10.85□□□□□ -0.67
TRIM28-214ENST00000600840 CLMNQ96JQ2 1002 aa10.85□□□□□ -0.67
TRIM28-214ENST00000600840 TDRD3Q9H7E2 651 aaKnown RBP10.85□□□□□ -0.67
TRIM28-214ENST00000600840 RBM27Q9P2N5 1060 aaKnown RBP10.85□□□□□ -0.67
TRIM28-214ENST00000600840 TRIOBPQ9H2D6 2365 aa10.85□□□□□ -0.67
TRIM28-214ENST00000600840 MROH5Q6ZUA9 1318 aa10.84□□□□□ -0.67
TRIM28-214ENST00000600840 HTTP42858 3142 aa10.84□□□□□ -0.67
TRIM28-214ENST00000600840 MANSC4A6NHS7 340 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-214ENST00000600840 SRGAP3O43295 1099 aa10.84□□□□□ -0.67
TRIM28-214ENST00000600840 PDE8BO95263 885 aa10.84□□□□□ -0.67
TRIM28-214ENST00000600840 FGFR2P21802 821 aa10.84□□□□□ -0.67
TRIM28-214ENST00000600840 RBM5P52756 815 aaKnown RBP eCLIP10.84□□□□□ -0.67
TRIM28-214ENST00000600840 HDAC1Q13547 482 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-214ENST00000600840 METTL24Q5JXM2 366 aa10.84□□□□□ -0.67
TRIM28-214ENST00000600840 WNK4Q96J92 1243 aa10.84□□□□□ -0.67
TRIM28-214ENST00000600840 ZNF333Q96JL9 665 aa10.84□□□□□ -0.67
TRIM28-214ENST00000600840 TMEM106CQ9BVX2 250 aa10.84□□□□□ -0.67
TRIM28-214ENST00000600840 EFCC1Q9HA90 598 aa10.84□□□□□ -0.67
TRIM28-214ENST00000600840 VEZTQ9HBM0 779 aa10.84□□□□□ -0.67
TRIM28-214ENST00000600840 ZNF70Q9UC06 446 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-214ENST00000600840 TTF2Q9UNY4 1162 aaKnown RBP10.84□□□□□ -0.67
TRIM28-214ENST00000600840 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-214ENST00000600840 OTOFQ9HC10 1997 aa10.84□□□□□ -0.67
TRIM28-214ENST00000600840 USP2O75604 605 aaPredicted RBP10.83□□□□□ -0.68
TRIM28-214ENST00000600840 GJA5P36382 358 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms