RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 LDHDQ86WU2 507 aa23.6■■□□□ 1.37
UPF1-209ENST00000600310 SERPINA10Q9UK55 444 aa23.6■■□□□ 1.37
UPF1-209ENST00000600310 SALL3Q9BXA9 1300 aa23.59■■□□□ 1.37
UPF1-209ENST00000600310 MYH13Q9UKX3 1938 aa23.59■■□□□ 1.37
UPF1-209ENST00000600310 POTEIP0CG38 1075 aa23.59■■□□□ 1.37
UPF1-209ENST00000600310 POTEJP0CG39 1038 aa23.59■■□□□ 1.37
UPF1-209ENST00000600310 ERICH6Q7L0X2 663 aa23.59■■□□□ 1.37
UPF1-209ENST00000600310 MTMR14Q8NCE2 650 aa23.59■■□□□ 1.37
UPF1-209ENST00000600310 ZBED3Q96IU2 234 aaPredicted RBP23.59■■□□□ 1.37
UPF1-209ENST00000600310 BOLA2Q9H3K6 86 aa23.59■■□□□ 1.37
UPF1-209ENST00000600310 TTC41PQ6P2S7 1318 aa23.59■■□□□ 1.37
UPF1-209ENST00000600310 CFAP100Q494V2 611 aa23.58■■□□□ 1.37
UPF1-209ENST00000600310 ZC3H15Q8WU90 426 aaKnown RBP23.58■■□□□ 1.37
UPF1-209ENST00000600310 HAUS7Q99871 368 aa23.58■■□□□ 1.37
UPF1-209ENST00000600310 PGAP2Q9UHJ9 254 aa23.58■■□□□ 1.37
UPF1-209ENST00000600310 AKAP11Q9UKA4 1901 aa23.57■■□□□ 1.36
UPF1-209ENST00000600310 WNT10BO00744 389 aa23.57■■□□□ 1.36
UPF1-209ENST00000600310 IGSF3O75054 1194 aa23.57■■□□□ 1.36
UPF1-209ENST00000600310 MX1P20591 662 aa23.57■■□□□ 1.36
UPF1-209ENST00000600310 CRKP46108 304 aa23.57■■□□□ 1.36
UPF1-209ENST00000600310 DLGAP5Q15398 846 aa23.57■■□□□ 1.36
UPF1-209ENST00000600310 RBM46Q8TBY0 533 aaKnown RBP23.57■■□□□ 1.36
UPF1-209ENST00000600310 CLEC11AQ9Y240 323 aa23.57■■□□□ 1.36
UPF1-209ENST00000600310 NDUFB9Q9Y6M9 179 aa23.57■■□□□ 1.36
UPF1-209ENST00000600310 HHIPL2Q6UWX4 724 aa23.56■■□□□ 1.36
UPF1-209ENST00000600310 TEKT1Q969V4 418 aa23.56■■□□□ 1.36
UPF1-209ENST00000600310 PIH1D3Q9NQM4 214 aaKnown RBP23.56■■□□□ 1.36
UPF1-209ENST00000600310 LRP2BPQ9P2M1 347 aa23.56■■□□□ 1.36
UPF1-209ENST00000600310 STAP2Q9UGK3 403 aa23.56■■□□□ 1.36
UPF1-209ENST00000600310 SPDYE2BA6NHP3 402 aa23.55■■□□□ 1.36
UPF1-209ENST00000600310 ERC2O15083 957 aa23.55■■□□□ 1.36
UPF1-209ENST00000600310 SPDYE6P0CI01 402 aa23.55■■□□□ 1.36
UPF1-209ENST00000600310 NBPF9Q3BBW0 867 aa23.55■■□□□ 1.36
UPF1-209ENST00000600310 TSHZ3Q63HK5 1081 aa23.55■■□□□ 1.36
UPF1-209ENST00000600310 CHADLQ6NUI6 762 aa23.55■■□□□ 1.36
UPF1-209ENST00000600310 CENPQQ7L2Z9 268 aaPredicted RBP23.55■■□□□ 1.36
UPF1-209ENST00000600310 DZIP1Q86YF9 867 aaKnown RBP23.55■■□□□ 1.36
UPF1-209ENST00000600310 CCDC136Q96JN2 1154 aa23.55■■□□□ 1.36
UPF1-209ENST00000600310 ZDHHC15Q96MV8 337 aa23.55■■□□□ 1.36
UPF1-209ENST00000600310 DNAJC2Q99543 621 aaKnown RBP23.55■■□□□ 1.36
UPF1-209ENST00000600310 ANTXR1Q9H6X2 564 aa23.55■■□□□ 1.36
UPF1-209ENST00000600310 PCDHAC2Q9Y5I4 1007 aa23.55■■□□□ 1.36
UPF1-209ENST00000600310 GLRX3O76003 335 aaKnown RBP23.54■■□□□ 1.36
UPF1-209ENST00000600310 RBM5P52756 815 aaKnown RBP eCLIP23.54■■□□□ 1.36
UPF1-209ENST00000600310 PDE1AP54750 535 aa23.54■■□□□ 1.36
UPF1-209ENST00000600310 MECOMQ03112 1051 aa23.54■■□□□ 1.36
UPF1-209ENST00000600310 TTF1Q15361 905 aaPredicted RBP23.54■■□□□ 1.36
UPF1-209ENST00000600310 SMC1BQ8NDV3 1235 aa23.54■■□□□ 1.36
UPF1-209ENST00000600310 PI4K2BQ8TCG2 481 aa23.54■■□□□ 1.36
UPF1-209ENST00000600310 PRMT6Q96LA8 375 aaPredicted RBP23.54■■□□□ 1.36
UPF1-209ENST00000600310 RAI14Q9P0K7 980 aa23.54■■□□□ 1.36
UPF1-209ENST00000600310 ADAMTSL1Q8N6G6 1762 aa23.54■■□□□ 1.36
UPF1-209ENST00000600310 GOLIM4O00461 696 aa23.53■■□□□ 1.36
UPF1-209ENST00000600310 DIXDC1Q155Q3 683 aa23.53■■□□□ 1.36
UPF1-209ENST00000600310 SLF2Q8IX21 1173 aa23.53■■□□□ 1.36
UPF1-209ENST00000600310 ZNF384Q8TF68 577 aa23.53■■□□□ 1.36
UPF1-209ENST00000600310 NSUN4Q96CB9 384 aaKnown RBP23.53■■□□□ 1.36
UPF1-209ENST00000600310 FAM163AQ96GL9 167 aaPredicted RBP23.53■■□□□ 1.36
UPF1-209ENST00000600310 PAG1Q9NWQ8 432 aa23.53■■□□□ 1.36
UPF1-209ENST00000600310 ASTN2O75129 1339 aaPredicted RBP23.53■■□□□ 1.36
UPF1-209ENST00000600310 EDC3Q96F86 508 aaKnown RBP23.52■■□□□ 1.36
UPF1-209ENST00000600310 DAGLAQ9Y4D2 1042 aa23.52■■□□□ 1.36
UPF1-209ENST00000600310 GAKO14976 1311 aa23.52■■□□□ 1.36
UPF1-209ENST00000600310 IDH1O75874 414 aaKnown RBP23.51■■□□□ 1.35
UPF1-209ENST00000600310 GSTO1P78417 241 aa23.51■■□□□ 1.35
UPF1-209ENST00000600310 FSTL1Q12841 308 aa23.51■■□□□ 1.35
UPF1-209ENST00000600310 MAP1SQ66K74 1059 aaPredicted RBP23.51■■□□□ 1.35
UPF1-209ENST00000600310 APOBEC3HQ6NTF7 200 aaKnown RBP23.51■■□□□ 1.35
UPF1-209ENST00000600310 PLEKHM2Q8IWE5 1019 aa23.51■■□□□ 1.35
UPF1-209ENST00000600310 PPP4R2Q9NY27 417 aa23.51■■□□□ 1.35
UPF1-209ENST00000600310 GGA3Q9NZ52 723 aa23.51■■□□□ 1.35
UPF1-209ENST00000600310 MYO1BO43795 1136 aa23.5■■□□□ 1.35
UPF1-209ENST00000600310 LDHCP07864 332 aa23.5■■□□□ 1.35
UPF1-209ENST00000600310 MAP3K12Q12852 859 aa23.5■■□□□ 1.35
UPF1-209ENST00000600310 ANGEL2Q5VTE6 544 aaKnown RBP23.5■■□□□ 1.35
UPF1-209ENST00000600310 CNTROBQ8N137 903 aa23.5■■□□□ 1.35
UPF1-209ENST00000600310 DCPSQ96C86 337 aaKnown RBP23.5■■□□□ 1.35
UPF1-209ENST00000600310 OSBPL3Q9H4L5 887 aa23.5■■□□□ 1.35
UPF1-209ENST00000600310 AOX1Q06278 1338 aa23.5■■□□□ 1.35
UPF1-209ENST00000600310 PITPNM2Q9BZ72 1349 aa23.5■■□□□ 1.35
UPF1-209ENST00000600310 PDE4AP27815 886 aa23.49■■□□□ 1.35
UPF1-209ENST00000600310 NAA16Q6N069 864 aaPredicted RBP23.49■■□□□ 1.35
UPF1-209ENST00000600310 TMED8Q6PL24 325 aaPredicted RBP23.49■■□□□ 1.35
UPF1-209ENST00000600310 SPDYE2Q495Y8 402 aa23.48■■□□□ 1.35
UPF1-209ENST00000600310 CDC37L1Q7L3B6 337 aa23.48■■□□□ 1.35
UPF1-209ENST00000600310 TDRD3Q9H7E2 651 aaKnown RBP23.48■■□□□ 1.35
UPF1-209ENST00000600310 MROH7-TTC4A0A0A0MT08 1334 aa23.48■■□□□ 1.35
UPF1-209ENST00000600310 GPR75-ASB3A0A0A6YYF3 556 aa23.47■■□□□ 1.35
UPF1-209ENST00000600310 ITGBL1O95965 494 aaPredicted RBP23.47■■□□□ 1.35
UPF1-209ENST00000600310 ZNF70Q9UC06 446 aaPredicted RBP23.47■■□□□ 1.35
UPF1-209ENST00000600310 CLRN2A0PK11 232 aa23.46■■□□□ 1.35
UPF1-209ENST00000600310 APLP1P51693 650 aa23.46■■□□□ 1.35
UPF1-209ENST00000600310 KRT26Q7Z3Y9 468 aa23.46■■□□□ 1.35
UPF1-209ENST00000600310 APOBEC3FQ8IUX4 373 aaKnown RBP23.46■■□□□ 1.35
UPF1-209ENST00000600310 SULF1Q8IWU6 871 aa23.46■■□□□ 1.35
UPF1-209ENST00000600310 MAGEB6Q8N7X4 407 aa23.46■■□□□ 1.35
UPF1-209ENST00000600310 CYP7A1P22680 504 aa23.45■■□□□ 1.34
UPF1-209ENST00000600310 KBTBD3Q8NAB2 608 aa23.45■■□□□ 1.34
UPF1-209ENST00000600310 GLIS2Q9BZE0 524 aaPredicted RBP23.45■■□□□ 1.34
UPF1-209ENST00000600310 PDE6AP16499 860 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms