RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 RPAP2Q8IXW5 612 aaPredicted RBP20■□□□□ 0.79
LSM4-206ENST00000600289 HPS5Q9UPZ3 1129 aa20■□□□□ 0.79
LSM4-206ENST00000600289 SUGT1Q9Y2Z0 365 aa20■□□□□ 0.79
LSM4-206ENST00000600289 PDS5AQ29RF7 1337 aaKnown RBP20■□□□□ 0.79
LSM4-206ENST00000600289 CTU1Q7Z7A3 348 aaKnown RBP19.99■□□□□ 0.79
LSM4-206ENST00000600289 GNL3LQ9NVN8 582 aaKnown RBP19.99■□□□□ 0.79
LSM4-206ENST00000600289 ASTN2O75129 1339 aaPredicted RBP19.99■□□□□ 0.79
LSM4-206ENST00000600289 FRAT2O75474 233 aaPredicted RBP19.98■□□□□ 0.79
LSM4-206ENST00000600289 NBPF9Q3BBW0 867 aa19.98■□□□□ 0.79
LSM4-206ENST00000600289 ANGEL2Q5VTE6 544 aaKnown RBP19.98■□□□□ 0.79
LSM4-206ENST00000600289 KRT26Q7Z3Y9 468 aa19.98■□□□□ 0.79
LSM4-206ENST00000600289 RNF186Q9NXI6 227 aa19.98■□□□□ 0.79
LSM4-206ENST00000600289 IQSEC3Q9UPP2 1182 aaPredicted RBP19.98■□□□□ 0.79
LSM4-206ENST00000600289 JAG2Q9Y219 1238 aa19.98■□□□□ 0.79
LSM4-206ENST00000600289 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.98■□□□□ 0.79
LSM4-206ENST00000600289 SURF6O75683 361 aaKnown RBP19.97■□□□□ 0.79
LSM4-206ENST00000600289 ADORA1P30542 326 aa19.97■□□□□ 0.79
LSM4-206ENST00000600289 RRP1P56182 461 aaKnown RBP19.97■□□□□ 0.79
LSM4-206ENST00000600289 HUNKP57058 714 aa19.97■□□□□ 0.79
LSM4-206ENST00000600289 TIMM10P62072 90 aa19.97■□□□□ 0.79
LSM4-206ENST00000600289 HDLBPQ00341 1268 aaKnown RBP19.97■□□□□ 0.79
LSM4-206ENST00000600289 CCDC102BQ68D86 513 aa19.97■□□□□ 0.79
LSM4-206ENST00000600289 USP48Q86UV5 1035 aa19.97■□□□□ 0.79
LSM4-206ENST00000600289 SULF1Q8IWU6 871 aa19.97■□□□□ 0.79
LSM4-206ENST00000600289 WDR66Q8TBY9 1149 aa19.97■□□□□ 0.79
LSM4-206ENST00000600289 SERPINA10Q9UK55 444 aa19.97■□□□□ 0.79
LSM4-206ENST00000600289 SALL1Q9NSC2 1324 aa19.97■□□□□ 0.79
LSM4-206ENST00000600289 MAST2Q6P0Q8 1798 aa19.96■□□□□ 0.79
LSM4-206ENST00000600289 PAPPA2Q9BXP8 1791 aa19.96■□□□□ 0.79
LSM4-206ENST00000600289 TRPA1O75762 1119 aa19.96■□□□□ 0.79
LSM4-206ENST00000600289 PHKA1P46020 1223 aa19.96■□□□□ 0.79
LSM4-206ENST00000600289 DLGAP5Q15398 846 aa19.96■□□□□ 0.79
LSM4-206ENST00000600289 XAGE2Q96GT9 111 aa19.96■□□□□ 0.79
LSM4-206ENST00000600289 DENND2AQ9ULE3 1009 aa19.96■□□□□ 0.79
LSM4-206ENST00000600289 TTF2Q9UNY4 1162 aaKnown RBP19.96■□□□□ 0.79
LSM4-206ENST00000600289 SPDYE2BA6NHP3 402 aa19.95■□□□□ 0.78
LSM4-206ENST00000600289 SPDYE6P0CI01 402 aa19.95■□□□□ 0.78
LSM4-206ENST00000600289 KIF23Q02241 960 aaPredicted RBP19.95■□□□□ 0.78
LSM4-206ENST00000600289 CHAF1AQ13111 956 aaPredicted RBP19.95■□□□□ 0.78
LSM4-206ENST00000600289 CFAP100Q494V2 611 aa19.95■□□□□ 0.78
LSM4-206ENST00000600289 MRIQ9BWK5 157 aa19.95■□□□□ 0.78
LSM4-206ENST00000600289 MYH2Q9UKX2 1941 aa19.95■□□□□ 0.78
LSM4-206ENST00000600289 MAST3O60307 1309 aa19.95■□□□□ 0.78
LSM4-206ENST00000600289 HTTP42858 3142 aa19.94■□□□□ 0.78
LSM4-206ENST00000600289 SZT2Q5T011 3432 aa19.94■□□□□ 0.78
LSM4-206ENST00000600289 ADM5C9JUS6 153 aa19.94■□□□□ 0.78
LSM4-206ENST00000600289 F8W031 263 aaPredicted RBP19.94■□□□□ 0.78
LSM4-206ENST00000600289 HMMRO75330 724 aa19.94■□□□□ 0.78
LSM4-206ENST00000600289 OS9Q13438 667 aaPredicted RBP19.94■□□□□ 0.78
LSM4-206ENST00000600289 TNNI3KQ59H18 835 aa19.94■□□□□ 0.78
LSM4-206ENST00000600289 DLK2Q6UY11 383 aa19.94■□□□□ 0.78
LSM4-206ENST00000600289 ERC1Q8IUD2 1116 aa19.94■□□□□ 0.78
LSM4-206ENST00000600289 APOBEC3FQ8IUX4 373 aaKnown RBP19.94■□□□□ 0.78
LSM4-206ENST00000600289 SIRT2Q8IXJ6 389 aa19.94■□□□□ 0.78
LSM4-206ENST00000600289 FPGT-TNNI3KV9GXZ4 949 aa19.94■□□□□ 0.78
LSM4-206ENST00000600289 FXR1P51114 621 aaKnown RBP eCLIP19.93■□□□□ 0.78
LSM4-206ENST00000600289 GRIK5Q16478 980 aa19.93■□□□□ 0.78
LSM4-206ENST00000600289 HSP90AB4PQ58FF6 505 aa19.93■□□□□ 0.78
LSM4-206ENST00000600289 RGMBQ6NW40 437 aa19.93■□□□□ 0.78
LSM4-206ENST00000600289 RBBP6Q7Z6E9 1792 aaKnown RBP19.93■□□□□ 0.78
LSM4-206ENST00000600289 ARID4AP29374 1257 aaPredicted RBP19.92■□□□□ 0.78
LSM4-206ENST00000600289 CDCA5Q96FF9 252 aa19.92■□□□□ 0.78
LSM4-206ENST00000600289 NEUROD6Q96NK8 337 aa19.92■□□□□ 0.78
LSM4-206ENST00000600289 DOCK2Q92608 1830 aa19.92■□□□□ 0.78
LSM4-206ENST00000600289 MYO1BO43795 1136 aa19.91■□□□□ 0.78
LSM4-206ENST00000600289 CRKP46108 304 aa19.91■□□□□ 0.78
LSM4-206ENST00000600289 RASGRF1Q13972 1273 aa19.91■□□□□ 0.78
LSM4-206ENST00000600289 ZGPATQ8N5A5 531 aaKnown RBP19.91■□□□□ 0.78
LSM4-206ENST00000600289 PRMT6Q96LA8 375 aaPredicted RBP19.91■□□□□ 0.78
LSM4-206ENST00000600289 CENPFP49454 3210 aa19.91■□□□□ 0.78
LSM4-206ENST00000600289 BRCA2P51587 3418 aa19.9■□□□□ 0.78
LSM4-206ENST00000600289 HHIPL2Q6UWX4 724 aa19.9■□□□□ 0.78
LSM4-206ENST00000600289 TEKT1Q969V4 418 aa19.9■□□□□ 0.78
LSM4-206ENST00000600289 ZNF512BQ96KM6 892 aaPredicted RBP19.9■□□□□ 0.78
LSM4-206ENST00000600289 EXOC6BQ9Y2D4 811 aa19.9■□□□□ 0.78
LSM4-206ENST00000600289 PCDHAC2Q9Y5I4 1007 aa19.9■□□□□ 0.78
LSM4-206ENST00000600289 PPP2R3BQ9Y5P8 575 aa19.9■□□□□ 0.78
LSM4-206ENST00000600289 LAMB1P07942 1786 aa19.9■□□□□ 0.78
LSM4-206ENST00000600289 MYO5AQ9Y4I1 1855 aaKnown RBP19.9■□□□□ 0.78
LSM4-206ENST00000600289 UQCRFS1P1P0C7P4 283 aa19.89■□□□□ 0.77
LSM4-206ENST00000600289 SPDYE2Q495Y8 402 aa19.89■□□□□ 0.77
LSM4-206ENST00000600289 ZDHHC15Q96MV8 337 aa19.89■□□□□ 0.77
LSM4-206ENST00000600289 RBM5P52756 815 aaKnown RBP eCLIP19.88■□□□□ 0.77
LSM4-206ENST00000600289 FKBP1BP68106 108 aa19.88■□□□□ 0.77
LSM4-206ENST00000600289 GORABQ5T7V8 394 aa19.88■□□□□ 0.77
LSM4-206ENST00000600289 CCDC102AQ96A19 550 aa19.88■□□□□ 0.77
LSM4-206ENST00000600289 CSRNP1Q96S65 589 aa19.88■□□□□ 0.77
LSM4-206ENST00000600289 AOX1Q06278 1338 aa19.87■□□□□ 0.77
LSM4-206ENST00000600289 RAB11FIP3O75154 756 aa19.87■□□□□ 0.77
LSM4-206ENST00000600289 LDHBP07195 334 aaKnown RBP19.87■□□□□ 0.77
LSM4-206ENST00000600289 SLC10A3P09131 477 aa19.87■□□□□ 0.77
LSM4-206ENST00000600289 PRDX5P30044 214 aa19.87■□□□□ 0.77
LSM4-206ENST00000600289 PKN2Q16513 984 aaKnown RBP19.87■□□□□ 0.77
LSM4-206ENST00000600289 RHPN1Q8TCX5 695 aa19.87■□□□□ 0.77
LSM4-206ENST00000600289 EAF2Q96CJ1 260 aaPredicted RBP19.87■□□□□ 0.77
LSM4-206ENST00000600289 KIF1BPQ96EK5 621 aa19.87■□□□□ 0.77
LSM4-206ENST00000600289 DBNDD2Q9BQY9 259 aa19.87■□□□□ 0.77
LSM4-206ENST00000600289 GBA2Q9HCG7 927 aaPredicted RBP19.87■□□□□ 0.77
LSM4-206ENST00000600289 HMG20BQ9P0W2 317 aa19.87■□□□□ 0.77
LSM4-206ENST00000600289 DBNLQ9UJU6 430 aaKnown RBP19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms