RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 SPDYE6P0CI01 402 aa15.71■□□□□ 0.11
UPF1-208ENST00000600012 CFAP100Q494V2 611 aa15.71■□□□□ 0.11
UPF1-208ENST00000600012 LDHAL6AQ6ZMR3 332 aa15.71■□□□□ 0.11
UPF1-208ENST00000600012 CNNM1Q9NRU3 951 aa15.71■□□□□ 0.11
UPF1-208ENST00000600012 C9orf78Q9NZ63 289 aaPredicted RBP15.71■□□□□ 0.11
UPF1-208ENST00000600012 LRRFIP2Q9Y608 721 aaKnown RBP15.71■□□□□ 0.11
UPF1-208ENST00000600012 ARAP2Q8WZ64 1704 aa15.71■□□□□ 0.1
UPF1-208ENST00000600012 MANSC4A6NHS7 340 aaPredicted RBP15.7■□□□□ 0.1
UPF1-208ENST00000600012 F8W031 263 aaPredicted RBP15.7■□□□□ 0.1
UPF1-208ENST00000600012 FKTNO75072 461 aa15.7■□□□□ 0.1
UPF1-208ENST00000600012 INHBEP58166 350 aa15.7■□□□□ 0.1
UPF1-208ENST00000600012 EPHA10Q5JZY3 1008 aa15.7■□□□□ 0.1
UPF1-208ENST00000600012 CEP85Q6P2H3 762 aa15.7■□□□□ 0.1
UPF1-208ENST00000600012 SLC10A4Q96EP9 437 aa15.7■□□□□ 0.1
UPF1-208ENST00000600012 TNRC18O15417 2968 aaPredicted RBP15.69■□□□□ 0.1
UPF1-208ENST00000600012 CLRN2A0PK11 232 aa15.69■□□□□ 0.1
UPF1-208ENST00000600012 UNCXA6NJT0 531 aa15.69■□□□□ 0.1
UPF1-208ENST00000600012 ZBTB48P10074 688 aaPredicted RBP15.69■□□□□ 0.1
UPF1-208ENST00000600012 SUPT20HL1Q3ZLR7 823 aa15.69■□□□□ 0.1
UPF1-208ENST00000600012 FBXO46Q6PJ61 603 aaPredicted RBP15.69■□□□□ 0.1
UPF1-208ENST00000600012 CENPQQ7L2Z9 268 aaPredicted RBP15.69■□□□□ 0.1
UPF1-208ENST00000600012 SIRT2Q8IXJ6 389 aa15.69■□□□□ 0.1
UPF1-208ENST00000600012 ANKRD44Q8N8A2 993 aa15.69■□□□□ 0.1
UPF1-208ENST00000600012 ZNF594Q96JF6 807 aaPredicted RBP15.69■□□□□ 0.1
UPF1-208ENST00000600012 FZD1Q9UP38 647 aa15.69■□□□□ 0.1
UPF1-208ENST00000600012 PCDHAC2Q9Y5I4 1007 aa15.69■□□□□ 0.1
UPF1-208ENST00000600012 UTYO14607 1347 aa15.68■□□□□ 0.1
UPF1-208ENST00000600012 FAM205AQ6ZU69 1335 aa15.68■□□□□ 0.1
UPF1-208ENST00000600012 HDAC1Q13547 482 aaPredicted RBP15.68■□□□□ 0.1
UPF1-208ENST00000600012 SUCLG2Q96I99 432 aa15.68■□□□□ 0.1
UPF1-208ENST00000600012 PRMT6Q96LA8 375 aaPredicted RBP15.68■□□□□ 0.1
UPF1-208ENST00000600012 RWDD1Q9H446 243 aaPredicted RBP15.68■□□□□ 0.1
UPF1-208ENST00000600012 VEZTQ9HBM0 779 aa15.68■□□□□ 0.1
UPF1-208ENST00000600012 IREB2P48200 963 aaKnown RBP15.67■□□□□ 0.1
UPF1-208ENST00000600012 RBM5P52756 815 aaKnown RBP eCLIP15.67■□□□□ 0.1
UPF1-208ENST00000600012 TNFAIP1Q13829 316 aa15.67■□□□□ 0.1
UPF1-208ENST00000600012 UBE4AQ14139 1066 aa15.67■□□□□ 0.1
UPF1-208ENST00000600012 WNK4Q96J92 1243 aa15.67■□□□□ 0.1
UPF1-208ENST00000600012 CLMNQ96JQ2 1002 aa15.67■□□□□ 0.1
UPF1-208ENST00000600012 JAG2Q9Y219 1238 aa15.67■□□□□ 0.1
UPF1-208ENST00000600012 OTOFQ9HC10 1997 aa15.67■□□□□ 0.1
UPF1-208ENST00000600012 MFSD14BQ5SR56 506 aa15.66■□□□□ 0.1
UPF1-208ENST00000600012 NBPF12Q5TAG4 269 aaPredicted RBP15.66■□□□□ 0.1
UPF1-208ENST00000600012 IFNL1Q8IU54 200 aa15.66■□□□□ 0.1
UPF1-208ENST00000600012 RPAP2Q8IXW5 612 aaPredicted RBP15.66■□□□□ 0.1
UPF1-208ENST00000600012 TDRD7Q8NHU6 1098 aaKnown RBP15.66■□□□□ 0.1
UPF1-208ENST00000600012 R3HDMLQ9H3Y0 253 aa15.66■□□□□ 0.1
UPF1-208ENST00000600012 HIBADHP31937 336 aaKnown RBP15.65■□□□□ 0.1
UPF1-208ENST00000600012 RASA3Q14644 834 aa15.65■□□□□ 0.1
UPF1-208ENST00000600012 SPDYE2Q495Y8 402 aa15.65■□□□□ 0.1
UPF1-208ENST00000600012 KAZALD1Q96I82 304 aa15.65■□□□□ 0.1
UPF1-208ENST00000600012 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.65■□□□□ 0.1
UPF1-208ENST00000600012 SERPINA10Q9UK55 444 aa15.65■□□□□ 0.1
UPF1-208ENST00000600012 AOX1Q06278 1338 aa15.65■□□□□ 0.1
UPF1-208ENST00000600012 PNMA6EA0A0J9YXQ4 647 aa15.64■□□□□ 0.09
UPF1-208ENST00000600012 IGF2BP3O00425 579 aaKnown RBP eCLIP15.64■□□□□ 0.09
UPF1-208ENST00000600012 USP2O75604 605 aaPredicted RBP15.64■□□□□ 0.09
UPF1-208ENST00000600012 GYG1P46976 350 aa15.64■□□□□ 0.09
UPF1-208ENST00000600012 ATP8B2P98198 1209 aa15.64■□□□□ 0.09
UPF1-208ENST00000600012 OTUD7BQ6GQQ9 843 aa15.64■□□□□ 0.09
UPF1-208ENST00000600012 ANKRD13AQ8IZ07 590 aa15.64■□□□□ 0.09
UPF1-208ENST00000600012 FAM84BQ96KN1 310 aaPredicted RBP15.64■□□□□ 0.09
UPF1-208ENST00000600012 BICC1Q9H694 974 aaKnown RBP15.64■□□□□ 0.09
UPF1-208ENST00000600012 TTF2Q9UNY4 1162 aaKnown RBP15.64■□□□□ 0.09
UPF1-208ENST00000600012 MROH5Q6ZUA9 1318 aa15.64■□□□□ 0.09
UPF1-208ENST00000600012 PRPF38BQ5VTL8 546 aaKnown RBP15.63■□□□□ 0.09
UPF1-208ENST00000600012 SKAP1Q86WV1 359 aa15.63■□□□□ 0.09
UPF1-208ENST00000600012 PUS3Q9BZE2 481 aaKnown RBP15.63■□□□□ 0.09
UPF1-208ENST00000600012 ZNF70Q9UC06 446 aaPredicted RBP15.63■□□□□ 0.09
UPF1-208ENST00000600012 HMMRO75330 724 aa15.62■□□□□ 0.09
UPF1-208ENST00000600012 TDRD3Q9H7E2 651 aaKnown RBP15.62■□□□□ 0.09
UPF1-208ENST00000600012 HDAC5Q9UQL6 1122 aa15.62■□□□□ 0.09
UPF1-208ENST00000600012 RIPOR2Q9Y4F9 1068 aa15.62■□□□□ 0.09
UPF1-208ENST00000600012 TRIM17Q9Y577 477 aa15.62■□□□□ 0.09
UPF1-208ENST00000600012 GJA5P36382 358 aa15.61■□□□□ 0.09
UPF1-208ENST00000600012 CRKP46108 304 aa15.61■□□□□ 0.09
UPF1-208ENST00000600012 RABL6Q3YEC7 729 aaPredicted RBP15.61■□□□□ 0.09
UPF1-208ENST00000600012 OTOP1Q7RTM1 612 aa15.61■□□□□ 0.09
UPF1-208ENST00000600012 VPS37DQ86XT2 251 aa15.61■□□□□ 0.09
UPF1-208ENST00000600012 SMC5Q8IY18 1101 aa15.61■□□□□ 0.09
UPF1-208ENST00000600012 ERO1AQ96HE7 468 aa15.61■□□□□ 0.09
UPF1-208ENST00000600012 TESPA1A2RU30 521 aaPredicted RBP15.6■□□□□ 0.09
UPF1-208ENST00000600012 SRGAP3O43295 1099 aa15.6■□□□□ 0.09
UPF1-208ENST00000600012 TNNI2P48788 182 aa15.6■□□□□ 0.09
UPF1-208ENST00000600012 CRHR2Q13324 411 aa15.6■□□□□ 0.09
UPF1-208ENST00000600012 MTX1Q13505 466 aa15.6■□□□□ 0.09
UPF1-208ENST00000600012 POLA2Q14181 598 aa15.6■□□□□ 0.09
UPF1-208ENST00000600012 TBC1D22AQ8WUA7 517 aa15.6■□□□□ 0.09
UPF1-208ENST00000600012 TEPSINQ96N21 525 aa15.6■□□□□ 0.09
UPF1-208ENST00000600012 KIAA0100Q14667 2235 aaKnown RBP15.6■□□□□ 0.09
UPF1-208ENST00000600012 RBBP6Q7Z6E9 1792 aaKnown RBP15.59■□□□□ 0.09
UPF1-208ENST00000600012 MYH13Q9UKX3 1938 aa15.59■□□□□ 0.09
UPF1-208ENST00000600012 HDLBPQ00341 1268 aaKnown RBP15.59■□□□□ 0.09
UPF1-208ENST00000600012 CAVIN4Q5BKX8 364 aa15.59■□□□□ 0.09
UPF1-208ENST00000600012 METTL24Q5JXM2 366 aa15.59■□□□□ 0.09
UPF1-208ENST00000600012 FBXO33Q7Z6M2 555 aa15.59■□□□□ 0.09
UPF1-208ENST00000600012 SSH3Q8TE77 659 aa15.59■□□□□ 0.09
UPF1-208ENST00000600012 GCC1Q96CN9 775 aa15.59■□□□□ 0.09
UPF1-208ENST00000600012 OPTNQ96CV9 577 aa15.59■□□□□ 0.09
UPF1-208ENST00000600012 ELP3Q9H9T3 547 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms