RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 R3HDMLQ9H3Y0 253 aa13.33□□□□□ -0.28
VRK3-214ENST00000598553 AK9Q5TCS8 1911 aa13.33□□□□□ -0.28
VRK3-214ENST00000598553 ZSWIM8A7E2V4 1837 aa13.32□□□□□ -0.28
VRK3-214ENST00000598553 PNMA6EA0A0J9YXQ4 647 aa13.32□□□□□ -0.28
VRK3-214ENST00000598553 TCP10L2B9ZVM9 353 aa13.32□□□□□ -0.28
VRK3-214ENST00000598553 TRPA1O75762 1119 aa13.32□□□□□ -0.28
VRK3-214ENST00000598553 RASA3Q14644 834 aa13.32□□□□□ -0.28
VRK3-214ENST00000598553 ATF7IPQ6VMQ6 1270 aa13.32□□□□□ -0.28
VRK3-214ENST00000598553 ARHGAP45Q92619 1136 aa13.32□□□□□ -0.28
VRK3-214ENST00000598553 ABHD8Q96I13 439 aa13.32□□□□□ -0.28
VRK3-214ENST00000598553 DOCK2Q92608 1830 aa13.32□□□□□ -0.28
VRK3-214ENST00000598553 USP2O75604 605 aaPredicted RBP13.31□□□□□ -0.28
VRK3-214ENST00000598553 CIAO1O76071 339 aa13.31□□□□□ -0.28
VRK3-214ENST00000598553 IFIT1P09914 478 aaKnown RBP13.31□□□□□ -0.28
VRK3-214ENST00000598553 SLC5A1P13866 664 aa13.31□□□□□ -0.28
VRK3-214ENST00000598553 PRDX5P30044 214 aa13.31□□□□□ -0.28
VRK3-214ENST00000598553 MMP14P50281 582 aa13.31□□□□□ -0.28
VRK3-214ENST00000598553 ATP2B3Q16720 1220 aa13.31□□□□□ -0.28
VRK3-214ENST00000598553 VPS37DQ86XT2 251 aa13.31□□□□□ -0.28
VRK3-214ENST00000598553 TMEM39BQ9GZU3 492 aa13.31□□□□□ -0.28
VRK3-214ENST00000598553 C1orf115Q9H7X2 142 aa13.31□□□□□ -0.28
VRK3-214ENST00000598553 COPRSQ9NQ92 184 aa13.31□□□□□ -0.28
VRK3-214ENST00000598553 SERPINA10Q9UK55 444 aa13.31□□□□□ -0.28
VRK3-214ENST00000598553 CDK5RAP2Q96SN8 1893 aa13.31□□□□□ -0.28
VRK3-214ENST00000598553 DIXDC1Q155Q3 683 aa13.3□□□□□ -0.28
VRK3-214ENST00000598553 MAP3K11Q16584 847 aa13.3□□□□□ -0.28
VRK3-214ENST00000598553 CAVIN4Q5BKX8 364 aa13.3□□□□□ -0.28
VRK3-214ENST00000598553 APOBEC3HQ6NTF7 200 aaKnown RBP13.3□□□□□ -0.28
VRK3-214ENST00000598553 CNKSR2Q8WXI2 1034 aa13.3□□□□□ -0.28
VRK3-214ENST00000598553 LPIN2Q92539 896 aa13.3□□□□□ -0.28
VRK3-214ENST00000598553 MCOLN1Q9GZU1 580 aa13.3□□□□□ -0.28
VRK3-214ENST00000598553 SRGAP3O43295 1099 aa13.29□□□□□ -0.28
VRK3-214ENST00000598553 TBC1D8O95759 1140 aa13.29□□□□□ -0.28
VRK3-214ENST00000598553 NF2P35240 595 aa13.29□□□□□ -0.28
VRK3-214ENST00000598553 TIMM10P62072 90 aa13.29□□□□□ -0.28
VRK3-214ENST00000598553 TFCP2Q12800 502 aa13.29□□□□□ -0.28
VRK3-214ENST00000598553 MTX1Q13505 466 aa13.29□□□□□ -0.28
VRK3-214ENST00000598553 SPRYD7Q5W111 196 aa13.29□□□□□ -0.28
VRK3-214ENST00000598553 CA12O43570 354 aa13.28□□□□□ -0.28
VRK3-214ENST00000598553 MYO1BO43795 1136 aa13.28□□□□□ -0.28
VRK3-214ENST00000598553 FRAT2O75474 233 aaPredicted RBP13.28□□□□□ -0.28
VRK3-214ENST00000598553 SLURP2P0DP57 97 aa13.28□□□□□ -0.28
VRK3-214ENST00000598553 PI16Q6UXB8 463 aa13.28□□□□□ -0.28
VRK3-214ENST00000598553 ARMC9Q7Z3E5 817 aa13.28□□□□□ -0.28
VRK3-214ENST00000598553 WNK4Q96J92 1243 aa13.28□□□□□ -0.28
VRK3-214ENST00000598553 SAGE1Q9NXZ1 904 aa13.28□□□□□ -0.28
VRK3-214ENST00000598553 CEP126Q9P2H0 1117 aa13.28□□□□□ -0.28
VRK3-214ENST00000598553 DAGLAQ9Y4D2 1042 aa13.28□□□□□ -0.28
VRK3-214ENST00000598553 ZBED9Q6R2W3 1325 aa13.28□□□□□ -0.28
VRK3-214ENST00000598553 A0A1B0GUL7 405 aa13.27□□□□□ -0.29
VRK3-214ENST00000598553 IL15P40933 162 aaPredicted RBP13.27□□□□□ -0.29
VRK3-214ENST00000598553 DGKZQ13574 1117 aa13.27□□□□□ -0.29
VRK3-214ENST00000598553 RASGRF1Q13972 1273 aa13.27□□□□□ -0.29
VRK3-214ENST00000598553 ZKSCAN2Q63HK3 967 aa13.27□□□□□ -0.29
VRK3-214ENST00000598553 CCDC102BQ68D86 513 aa13.27□□□□□ -0.29
VRK3-214ENST00000598553 ZDHHC15Q96MV8 337 aa13.27□□□□□ -0.29
VRK3-214ENST00000598553 FBXO3Q9UK99 471 aa13.27□□□□□ -0.29
VRK3-214ENST00000598553 PPP2R3BQ9Y5P8 575 aa13.27□□□□□ -0.29
VRK3-214ENST00000598553 MAST2Q6P0Q8 1798 aa13.27□□□□□ -0.29
VRK3-214ENST00000598553 SIPA1L1O43166 1804 aa13.27□□□□□ -0.29
VRK3-214ENST00000598553 IGF2BP3O00425 579 aaKnown RBP eCLIP13.26□□□□□ -0.29
VRK3-214ENST00000598553 GNAI3P08754 354 aa13.26□□□□□ -0.29
VRK3-214ENST00000598553 HDLBPQ00341 1268 aaKnown RBP13.26□□□□□ -0.29
VRK3-214ENST00000598553 CAP1Q01518 475 aa13.26□□□□□ -0.29
VRK3-214ENST00000598553 NFIAQ12857 509 aa13.26□□□□□ -0.29
VRK3-214ENST00000598553 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.26□□□□□ -0.29
VRK3-214ENST00000598553 ZNF384Q8TF68 577 aa13.26□□□□□ -0.29
VRK3-214ENST00000598553 TBC1D22AQ8WUA7 517 aa13.26□□□□□ -0.29
VRK3-214ENST00000598553 TEKT1Q969V4 418 aa13.26□□□□□ -0.29
VRK3-214ENST00000598553 XAGE2Q96GT9 111 aa13.26□□□□□ -0.29
VRK3-214ENST00000598553 ELP3Q9H9T3 547 aa13.26□□□□□ -0.29
VRK3-214ENST00000598553 PTPRFP10586 1907 aa13.25□□□□□ -0.29
VRK3-214ENST00000598553 PHIPQ8WWQ0 1821 aa13.25□□□□□ -0.29
VRK3-214ENST00000598553 RFX7Q2KHR2 1363 aa13.25□□□□□ -0.29
VRK3-214ENST00000598553 TM4SF4P48230 202 aa13.25□□□□□ -0.29
VRK3-214ENST00000598553 POLA2Q14181 598 aa13.25□□□□□ -0.29
VRK3-214ENST00000598553 CDC42EP5Q6NZY7 148 aa13.25□□□□□ -0.29
VRK3-214ENST00000598553 ZFPM1Q8IX07 1006 aa13.25□□□□□ -0.29
VRK3-214ENST00000598553 PANK1Q8TE04 598 aa13.25□□□□□ -0.29
VRK3-214ENST00000598553 ATAD5Q96QE3 1844 aa13.25□□□□□ -0.29
VRK3-214ENST00000598553 IPO8O15397 1037 aaKnown RBP13.24□□□□□ -0.29
VRK3-214ENST00000598553 GNAI2P04899 355 aa13.24□□□□□ -0.29
VRK3-214ENST00000598553 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.24□□□□□ -0.29
VRK3-214ENST00000598553 WDR66Q8TBY9 1149 aa13.24□□□□□ -0.29
VRK3-214ENST00000598553 ZNF296Q8WUU4 475 aaPredicted RBP13.24□□□□□ -0.29
VRK3-214ENST00000598553 PTPN18Q99952 460 aa13.24□□□□□ -0.29
VRK3-214ENST00000598553 FAM198AQ9UFP1 575 aa13.24□□□□□ -0.29
VRK3-214ENST00000598553 FOCADQ5VW36 1801 aa13.24□□□□□ -0.29
VRK3-214ENST00000598553 SALL1Q9NSC2 1324 aa13.23□□□□□ -0.29
VRK3-214ENST00000598553 CCDC85CA6NKD9 419 aa13.23□□□□□ -0.29
VRK3-214ENST00000598553 TCP10Q12799 353 aa13.23□□□□□ -0.29
VRK3-214ENST00000598553 VGLL4Q14135 290 aa13.23□□□□□ -0.29
VRK3-214ENST00000598553 SUPT20HL1Q3ZLR7 823 aa13.23□□□□□ -0.29
VRK3-214ENST00000598553 HHIPL2Q6UWX4 724 aa13.23□□□□□ -0.29
VRK3-214ENST00000598553 SLC10A4Q96EP9 437 aa13.23□□□□□ -0.29
VRK3-214ENST00000598553 SNCAIPQ9Y6H5 919 aa13.23□□□□□ -0.29
VRK3-214ENST00000598553 DOCK1Q14185 1865 aa13.23□□□□□ -0.29
VRK3-214ENST00000598553 RPAP1Q9BWH6 1393 aaPredicted RBP13.22□□□□□ -0.29
VRK3-214ENST00000598553 ZBTB7BO15156 539 aaPredicted RBP13.22□□□□□ -0.29
VRK3-214ENST00000598553 PPP1R12BO60237 982 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms