RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 GSDMDP57764 484 aa12.63□□□□□ -0.39
VPS4B-206ENST00000591475 CCT2P78371 535 aaKnown RBP12.63□□□□□ -0.39
VPS4B-206ENST00000591475 ARID5BQ14865 1188 aa12.63□□□□□ -0.39
VPS4B-206ENST00000591475 SLC27A3Q5K4L6 730 aa12.63□□□□□ -0.39
VPS4B-206ENST00000591475 NYAP1Q6ZVC0 841 aa12.63□□□□□ -0.39
VPS4B-206ENST00000591475 ZNF274Q96GC6 653 aaPredicted RBP12.63□□□□□ -0.39
VPS4B-206ENST00000591475 PAG1Q9NWQ8 432 aa12.63□□□□□ -0.39
VPS4B-206ENST00000591475 MAP3K15Q6ZN16 1313 aa12.63□□□□□ -0.39
VPS4B-206ENST00000591475 USP27XA6NNY8 438 aa12.62□□□□□ -0.39
VPS4B-206ENST00000591475 E7EWF7 191 aa12.62□□□□□ -0.39
VPS4B-206ENST00000591475 KCNQ4P56696 695 aa12.62□□□□□ -0.39
VPS4B-206ENST00000591475 CCZ1BP86790 482 aa12.62□□□□□ -0.39
VPS4B-206ENST00000591475 CCZ1P86791 482 aaPredicted RBP12.62□□□□□ -0.39
VPS4B-206ENST00000591475 FILIP1Q7Z7B0 1213 aa12.62□□□□□ -0.39
VPS4B-206ENST00000591475 DZIP3Q86Y13 1208 aaKnown RBP12.62□□□□□ -0.39
VPS4B-206ENST00000591475 AOPEPQ8N6M6 819 aa12.62□□□□□ -0.39
VPS4B-206ENST00000591475 MRPS27Q92552 414 aaKnown RBP12.62□□□□□ -0.39
VPS4B-206ENST00000591475 KCND1Q9NSA2 647 aa12.62□□□□□ -0.39
VPS4B-206ENST00000591475 NAP1L2Q9ULW6 460 aaPredicted RBP12.62□□□□□ -0.39
VPS4B-206ENST00000591475 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.62□□□□□ -0.39
VPS4B-206ENST00000591475 ERVV-1B6SEH8 477 aa12.62□□□□□ -0.39
VPS4B-206ENST00000591475 KIF2AO00139 706 aaPredicted RBP12.62□□□□□ -0.39
VPS4B-206ENST00000591475 GOLIM4O00461 696 aa12.62□□□□□ -0.39
VPS4B-206ENST00000591475 PLSCR1O15162 318 aa12.62□□□□□ -0.39
VPS4B-206ENST00000591475 ZMYM1Q5SVZ6 1142 aa12.62□□□□□ -0.39
VPS4B-206ENST00000591475 CARMIL3Q8ND23 1372 aa12.62□□□□□ -0.39
VPS4B-206ENST00000591475 LY75O60449 1722 aa12.62□□□□□ -0.39
VPS4B-206ENST00000591475 COL5A3P25940 1745 aaPredicted RBP12.62□□□□□ -0.39
VPS4B-206ENST00000591475 PDIA3P30101 505 aaKnown RBP12.61□□□□□ -0.39
VPS4B-206ENST00000591475 NAA30Q147X3 362 aaPredicted RBP12.61□□□□□ -0.39
VPS4B-206ENST00000591475 GIGYF2Q6Y7W6 1299 aaKnown RBP12.61□□□□□ -0.39
VPS4B-206ENST00000591475 FMR1NBQ8N0W7 255 aaPredicted RBP12.61□□□□□ -0.39
VPS4B-206ENST00000591475 CCAR2Q8N163 923 aaKnown RBP12.61□□□□□ -0.39
VPS4B-206ENST00000591475 NEUROD6Q96NK8 337 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 NCOA5Q9HCD5 579 aaKnown RBP12.61□□□□□ -0.39
VPS4B-206ENST00000591475 GPR108Q9NPR9 543 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 RTEL1Q9NZ71 1219 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 IMPACTQ9P2X3 320 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 DDX41Q9UJV9 622 aaKnown RBP12.61□□□□□ -0.39
VPS4B-206ENST00000591475 RREB1Q92766 1687 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 A0A1W2PQ27 194 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 A0A1W2PQ64 194 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 A0A1W2PQD8 194 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 ATP5J2-PTCD1G3V325 749 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 APBA3O96018 575 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 CASP7P55210 303 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 GUCY1B3Q02153 619 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 TCIRG1Q13488 830 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 ZRSR1Q15695 479 aaKnown RBP12.61□□□□□ -0.39
VPS4B-206ENST00000591475 HSP90AB3PQ58FF7 597 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 ADALQ6DHV7 355 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 LMBR1LQ6UX01 489 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 CCDC191Q8NCU4 936 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 ZNF397Q8NF99 534 aaPredicted RBP12.61□□□□□ -0.39
VPS4B-206ENST00000591475 SDF4Q9BRK5 362 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 PCDHA7Q9UN72 937 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 TBC1D2BQ9UPU7 963 aa12.61□□□□□ -0.39
VPS4B-206ENST00000591475 RPS6KA4O75676 772 aa12.6□□□□□ -0.39
VPS4B-206ENST00000591475 HSPD1P10809 573 aaKnown RBP12.6□□□□□ -0.39
VPS4B-206ENST00000591475 GABPB1Q06547 395 aaPredicted RBP12.6□□□□□ -0.39
VPS4B-206ENST00000591475 KIF18AQ8NI77 898 aa12.6□□□□□ -0.39
VPS4B-206ENST00000591475 BPIFA3Q9BQP9 254 aa12.6□□□□□ -0.39
VPS4B-206ENST00000591475 OSBPL5Q9H0X9 879 aaPredicted RBP12.6□□□□□ -0.39
VPS4B-206ENST00000591475 LRRC4BQ9NT99 713 aa12.6□□□□□ -0.39
VPS4B-206ENST00000591475 MORC2Q9Y6X9 1032 aaPredicted RBP12.6□□□□□ -0.39
VPS4B-206ENST00000591475 A0A087WWV3 80 aa12.59□□□□□ -0.39
VPS4B-206ENST00000591475 RNF113AO15541 343 aaKnown RBP12.59□□□□□ -0.39
VPS4B-206ENST00000591475 TRIM28Q13263 835 aaKnown RBP12.59□□□□□ -0.39
VPS4B-206ENST00000591475 DHX8Q14562 1220 aaKnown RBP12.59□□□□□ -0.39
VPS4B-206ENST00000591475 ERO1AQ96HE7 468 aa12.59□□□□□ -0.39
VPS4B-206ENST00000591475 CWC25Q9NXE8 425 aaPredicted RBP12.59□□□□□ -0.39
VPS4B-206ENST00000591475 MAST3O60307 1309 aa12.59□□□□□ -0.39
VPS4B-206ENST00000591475 TPM4P67936 248 aa12.59□□□□□ -0.39
VPS4B-206ENST00000591475 FOXO4P98177 505 aa12.59□□□□□ -0.39
VPS4B-206ENST00000591475 STK38Q15208 465 aa12.59□□□□□ -0.39
VPS4B-206ENST00000591475 SF3A1Q15459 793 aaKnown RBP12.59□□□□□ -0.39
VPS4B-206ENST00000591475 TXNRD1Q16881 649 aa12.59□□□□□ -0.39
VPS4B-206ENST00000591475 ATG9AQ7Z3C6 839 aa12.59□□□□□ -0.39
VPS4B-206ENST00000591475 FBXL16Q8N461 479 aa12.59□□□□□ -0.39
VPS4B-206ENST00000591475 CCDC150Q8NCX0 1101 aa12.59□□□□□ -0.39
VPS4B-206ENST00000591475 KCNG4Q8TDN1 519 aa12.59□□□□□ -0.39
VPS4B-206ENST00000591475 TRMT1Q9NXH9 659 aaKnown RBP12.59□□□□□ -0.39
VPS4B-206ENST00000591475 ZNF215Q9UL58 517 aaPredicted RBP12.59□□□□□ -0.39
VPS4B-206ENST00000591475 RTCBQ9Y3I0 505 aaKnown RBP12.59□□□□□ -0.39
VPS4B-206ENST00000591475 MYH14Q7Z406 1995 aaKnown RBP12.58□□□□□ -0.39
VPS4B-206ENST00000591475 NUP188Q5SRE5 1749 aa12.58□□□□□ -0.39
VPS4B-206ENST00000591475 DDX60Q8IY21 1712 aaKnown RBP12.58□□□□□ -0.39
VPS4B-206ENST00000591475 A0A1B0GVL5 298 aa12.58□□□□□ -0.4
VPS4B-206ENST00000591475 GNPATO15228 680 aa12.58□□□□□ -0.4
VPS4B-206ENST00000591475 YEATS4O95619 227 aa12.58□□□□□ -0.4
VPS4B-206ENST00000591475 IFIT1P09914 478 aaKnown RBP12.58□□□□□ -0.4
VPS4B-206ENST00000591475 IL15P40933 162 aaPredicted RBP12.58□□□□□ -0.4
VPS4B-206ENST00000591475 NDUFA8P51970 172 aa12.58□□□□□ -0.4
VPS4B-206ENST00000591475 EVCP57679 992 aa12.58□□□□□ -0.4
VPS4B-206ENST00000591475 HLFQ16534 295 aa12.58□□□□□ -0.4
VPS4B-206ENST00000591475 SLFNL1Q499Z3 407 aa12.58□□□□□ -0.4
VPS4B-206ENST00000591475 ILDR2Q71H61 639 aa12.58□□□□□ -0.4
VPS4B-206ENST00000591475 NBPF11Q86T75 865 aa12.58□□□□□ -0.4
VPS4B-206ENST00000591475 AK7Q96M32 723 aa12.58□□□□□ -0.4
VPS4B-206ENST00000591475 ISCA1Q9BUE6 129 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms