RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 ZNF70Q9UC06 446 aaPredicted RBP18.83■□□□□ 0.6
CLIP3-202ENST00000585466 SUGT1Q9Y2Z0 365 aa18.83■□□□□ 0.6
CLIP3-202ENST00000585466 OTOFQ9HC10 1997 aa18.82■□□□□ 0.6
CLIP3-202ENST00000585466 UBE2Q2LH0YL09 131 aa18.82■□□□□ 0.6
CLIP3-202ENST00000585466 CTCFP49711 727 aaPredicted RBP18.82■□□□□ 0.6
CLIP3-202ENST00000585466 ZNF157P51786 506 aaPredicted RBP18.82■□□□□ 0.6
CLIP3-202ENST00000585466 CCDC102BQ68D86 513 aa18.82■□□□□ 0.6
CLIP3-202ENST00000585466 MRIQ9BWK5 157 aa18.82■□□□□ 0.6
CLIP3-202ENST00000585466 TDRD3Q9H7E2 651 aaKnown RBP18.82■□□□□ 0.6
CLIP3-202ENST00000585466 PPP2R3BQ9Y5P8 575 aa18.82■□□□□ 0.6
CLIP3-202ENST00000585466 LAMB1P07942 1786 aa18.82■□□□□ 0.6
CLIP3-202ENST00000585466 SALL1Q9NSC2 1324 aa18.81■□□□□ 0.6
CLIP3-202ENST00000585466 A0A1B0GUL7 405 aa18.81■□□□□ 0.6
CLIP3-202ENST00000585466 FRAT2O75474 233 aaPredicted RBP18.81■□□□□ 0.6
CLIP3-202ENST00000585466 RBM5P52756 815 aaKnown RBP eCLIP18.81■□□□□ 0.6
CLIP3-202ENST00000585466 APOBEC3HQ6NTF7 200 aaKnown RBP18.81■□□□□ 0.6
CLIP3-202ENST00000585466 CDAN1Q8IWY9 1227 aa18.81■□□□□ 0.6
CLIP3-202ENST00000585466 WDR66Q8TBY9 1149 aa18.81■□□□□ 0.6
CLIP3-202ENST00000585466 CCDC102AQ96A19 550 aa18.81■□□□□ 0.6
CLIP3-202ENST00000585466 ZDHHC15Q96MV8 337 aa18.81■□□□□ 0.6
CLIP3-202ENST00000585466 PRDM10Q9NQV6 1147 aa18.81■□□□□ 0.6
CLIP3-202ENST00000585466 FZD1Q9UP38 647 aa18.81■□□□□ 0.6
CLIP3-202ENST00000585466 SEMA3EO15041 775 aa18.8■□□□□ 0.6
CLIP3-202ENST00000585466 MYO1BO43795 1136 aa18.8■□□□□ 0.6
CLIP3-202ENST00000585466 PRDX5P30044 214 aa18.8■□□□□ 0.6
CLIP3-202ENST00000585466 RASGRF1Q13972 1273 aa18.8■□□□□ 0.6
CLIP3-202ENST00000585466 RASA3Q14644 834 aa18.8■□□□□ 0.6
CLIP3-202ENST00000585466 MAP3K11Q16584 847 aa18.8■□□□□ 0.6
CLIP3-202ENST00000585466 LDLRAD1Q5T700 205 aa18.8■□□□□ 0.6
CLIP3-202ENST00000585466 AIDAQ96BJ3 306 aa18.8■□□□□ 0.6
CLIP3-202ENST00000585466 XAGE2Q96GT9 111 aa18.8■□□□□ 0.6
CLIP3-202ENST00000585466 TEPSINQ96N21 525 aa18.8■□□□□ 0.6
CLIP3-202ENST00000585466 VEZTQ9HBM0 779 aa18.8■□□□□ 0.6
CLIP3-202ENST00000585466 PDS5AQ29RF7 1337 aaKnown RBP18.79■□□□□ 0.6
CLIP3-202ENST00000585466 LBX1P52954 281 aa18.79■□□□□ 0.6
CLIP3-202ENST00000585466 NBPF12Q5TAG4 269 aaPredicted RBP18.79■□□□□ 0.6
CLIP3-202ENST00000585466 HHIPL2Q6UWX4 724 aa18.79■□□□□ 0.6
CLIP3-202ENST00000585466 TEKT1Q969V4 418 aa18.79■□□□□ 0.6
CLIP3-202ENST00000585466 RCAN3Q9UKA8 241 aa18.79■□□□□ 0.6
CLIP3-202ENST00000585466 NOP58Q9Y2X3 529 aaKnown RBP18.79■□□□□ 0.6
CLIP3-202ENST00000585466 AKAP11Q9UKA4 1901 aa18.78■□□□□ 0.6
CLIP3-202ENST00000585466 MYH2Q9UKX2 1941 aa18.78■□□□□ 0.6
CLIP3-202ENST00000585466 KIF23Q02241 960 aaPredicted RBP18.78■□□□□ 0.6
CLIP3-202ENST00000585466 CEP85Q6P2H3 762 aa18.78■□□□□ 0.6
CLIP3-202ENST00000585466 TNS4Q8IZW8 715 aa18.78■□□□□ 0.6
CLIP3-202ENST00000585466 DENND2AQ9ULE3 1009 aa18.78■□□□□ 0.6
CLIP3-202ENST00000585466 AKAP2Q9Y2D5 859 aa18.78■□□□□ 0.6
CLIP3-202ENST00000585466 MAST3O60307 1309 aa18.77■□□□□ 0.6
CLIP3-202ENST00000585466 NF2P35240 595 aa18.77■□□□□ 0.6
CLIP3-202ENST00000585466 PRKG1Q13976 671 aa18.77■□□□□ 0.6
CLIP3-202ENST00000585466 DIXDC1Q155Q3 683 aa18.77■□□□□ 0.6
CLIP3-202ENST00000585466 GNL3LQ9NVN8 582 aaKnown RBP18.77■□□□□ 0.6
CLIP3-202ENST00000585466 TSKSQ9UJT2 592 aa18.77■□□□□ 0.6
CLIP3-202ENST00000585466 DAGLAQ9Y4D2 1042 aa18.77■□□□□ 0.6
CLIP3-202ENST00000585466 CACNB3P54284 484 aa18.76■□□□□ 0.59
CLIP3-202ENST00000585466 G3BP1Q13283 466 aaKnown RBP eCLIP18.76■□□□□ 0.59
CLIP3-202ENST00000585466 MVPQ14764 893 aaKnown RBP18.76■□□□□ 0.59
CLIP3-202ENST00000585466 CSRNP1Q96S65 589 aa18.76■□□□□ 0.59
CLIP3-202ENST00000585466 TMEM39BQ9GZU3 492 aa18.76■□□□□ 0.59
CLIP3-202ENST00000585466 TCP10L2B9ZVM9 353 aa18.75■□□□□ 0.59
CLIP3-202ENST00000585466 ARID4AP29374 1257 aaPredicted RBP18.75■□□□□ 0.59
CLIP3-202ENST00000585466 TNFAIP1Q13829 316 aa18.75■□□□□ 0.59
CLIP3-202ENST00000585466 ARMC9Q7Z3E5 817 aa18.75■□□□□ 0.59
CLIP3-202ENST00000585466 ZNF384Q8TF68 577 aa18.75■□□□□ 0.59
CLIP3-202ENST00000585466 GPR108Q9NPR9 543 aa18.75■□□□□ 0.59
CLIP3-202ENST00000585466 ANGEL1Q9UNK9 670 aaKnown RBP18.75■□□□□ 0.59
CLIP3-202ENST00000585466 CASP8AP2Q9UKL3 1982 aa18.75■□□□□ 0.59
CLIP3-202ENST00000585466 RFX7Q2KHR2 1363 aa18.74■□□□□ 0.59
CLIP3-202ENST00000585466 CA12O43570 354 aa18.74■□□□□ 0.59
CLIP3-202ENST00000585466 USP2O75604 605 aaPredicted RBP18.74■□□□□ 0.59
CLIP3-202ENST00000585466 TTLL12Q14166 644 aaPredicted RBP18.74■□□□□ 0.59
CLIP3-202ENST00000585466 C20orf194Q5TEA3 1177 aa18.74■□□□□ 0.59
CLIP3-202ENST00000585466 FKBP1CQ5VVH2 108 aa18.74■□□□□ 0.59
CLIP3-202ENST00000585466 PI16Q6UXB8 463 aa18.74■□□□□ 0.59
CLIP3-202ENST00000585466 CLMNQ96JQ2 1002 aa18.74■□□□□ 0.59
CLIP3-202ENST00000585466 ZBTB40Q9NUA8 1239 aa18.74■□□□□ 0.59
CLIP3-202ENST00000585466 HMG20BQ9P0W2 317 aa18.74■□□□□ 0.59
CLIP3-202ENST00000585466 COG6Q9Y2V7 657 aa18.74■□□□□ 0.59
CLIP3-202ENST00000585466 GAKO14976 1311 aa18.74■□□□□ 0.59
CLIP3-202ENST00000585466 RPAP1Q9BWH6 1393 aaPredicted RBP18.73■□□□□ 0.59
CLIP3-202ENST00000585466 SURF6O75683 361 aaKnown RBP18.73■□□□□ 0.59
CLIP3-202ENST00000585466 LDHBP07195 334 aaKnown RBP18.73■□□□□ 0.59
CLIP3-202ENST00000585466 SUPT20HL1Q3ZLR7 823 aa18.73■□□□□ 0.59
CLIP3-202ENST00000585466 TNNI3KQ59H18 835 aa18.73■□□□□ 0.59
CLIP3-202ENST00000585466 SIRT2Q8IXJ6 389 aa18.73■□□□□ 0.59
CLIP3-202ENST00000585466 NEUROD6Q96NK8 337 aa18.73■□□□□ 0.59
CLIP3-202ENST00000585466 FPGT-TNNI3KV9GXZ4 949 aa18.73■□□□□ 0.59
CLIP3-202ENST00000585466 MYO5AQ9Y4I1 1855 aaKnown RBP18.73■□□□□ 0.59
CLIP3-202ENST00000585466 CAPN15O75808 1086 aa18.72■□□□□ 0.59
CLIP3-202ENST00000585466 MS4A1P11836 297 aa18.72■□□□□ 0.59
CLIP3-202ENST00000585466 MCAMP43121 646 aa18.72■□□□□ 0.59
CLIP3-202ENST00000585466 CDC42EP5Q6NZY7 148 aa18.72■□□□□ 0.59
CLIP3-202ENST00000585466 FAM83AQ86UY5 434 aa18.72■□□□□ 0.59
CLIP3-202ENST00000585466 BEGAINQ9BUH8 593 aa18.72■□□□□ 0.59
CLIP3-202ENST00000585466 RNF186Q9NXI6 227 aa18.72■□□□□ 0.59
CLIP3-202ENST00000585466 SAGE1Q9NXZ1 904 aa18.72■□□□□ 0.59
CLIP3-202ENST00000585466 SPRYD7Q5W111 196 aa18.71■□□□□ 0.59
CLIP3-202ENST00000585466 DBNDD2Q9BQY9 259 aa18.71■□□□□ 0.59
CLIP3-202ENST00000585466 UNCXA6NJT0 531 aa18.7■□□□□ 0.58
CLIP3-202ENST00000585466 PPP1R12BO60237 982 aaPredicted RBP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms