RNA–Protein interactions for RNA: ENST00000580073.1

TRAF4-214, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 449 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-214ENST00000580073 HDLBPQ00341 1268 aaKnown RBP16.78■□□□□ 0.28
TRAF4-214ENST00000580073 NBPF12Q5TAG4 269 aaPredicted RBP16.78■□□□□ 0.28
TRAF4-214ENST00000580073 CLMNQ96JQ2 1002 aa16.78■□□□□ 0.28
TRAF4-214ENST00000580073 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.78■□□□□ 0.28
TRAF4-214ENST00000580073 ZNF70Q9UC06 446 aaPredicted RBP16.78■□□□□ 0.28
TRAF4-214ENST00000580073 DOCK2Q92608 1830 aa16.77■□□□□ 0.28
TRAF4-214ENST00000580073 CRKP46108 304 aa16.77■□□□□ 0.28
TRAF4-214ENST00000580073 GYG1P46976 350 aa16.77■□□□□ 0.28
TRAF4-214ENST00000580073 METTL24Q5JXM2 366 aa16.77■□□□□ 0.28
TRAF4-214ENST00000580073 SUCLG2Q96I99 432 aa16.77■□□□□ 0.28
TRAF4-214ENST00000580073 FZD1Q9UP38 647 aa16.77■□□□□ 0.28
TRAF4-214ENST00000580073 RPAP1Q9BWH6 1393 aaPredicted RBP16.77■□□□□ 0.27
TRAF4-214ENST00000580073 IGF2BP3O00425 579 aaKnown RBP eCLIP16.76■□□□□ 0.27
TRAF4-214ENST00000580073 RABL6Q3YEC7 729 aaPredicted RBP16.76■□□□□ 0.27
TRAF4-214ENST00000580073 DZIP1LQ8IYY4 767 aaKnown RBP16.76■□□□□ 0.27
TRAF4-214ENST00000580073 TEKT1Q969V4 418 aa16.76■□□□□ 0.27
TRAF4-214ENST00000580073 GCC1Q96CN9 775 aa16.76■□□□□ 0.27
TRAF4-214ENST00000580073 OPTNQ96CV9 577 aa16.76■□□□□ 0.27
TRAF4-214ENST00000580073 FAM84BQ96KN1 310 aaPredicted RBP16.76■□□□□ 0.27
TRAF4-214ENST00000580073 SUGT1Q9Y2Z0 365 aa16.76■□□□□ 0.27
TRAF4-214ENST00000580073 PCDHAC2Q9Y5I4 1007 aa16.76■□□□□ 0.27
TRAF4-214ENST00000580073 E9PSI1 815 aa16.75■□□□□ 0.27
TRAF4-214ENST00000580073 USP2O75604 605 aaPredicted RBP16.75■□□□□ 0.27
TRAF4-214ENST00000580073 GTF2A2P52657 109 aa16.75■□□□□ 0.27
TRAF4-214ENST00000580073 CRHR2Q13324 411 aa16.75■□□□□ 0.27
TRAF4-214ENST00000580073 OTOP1Q7RTM1 612 aa16.75■□□□□ 0.27
TRAF4-214ENST00000580073 BICC1Q9H694 974 aaKnown RBP16.75■□□□□ 0.27
TRAF4-214ENST00000580073 TDRD3Q9H7E2 651 aaKnown RBP16.75■□□□□ 0.27
TRAF4-214ENST00000580073 RIPOR2Q9Y4F9 1068 aa16.75■□□□□ 0.27
TRAF4-214ENST00000580073 TESPA1A2RU30 521 aaPredicted RBP16.74■□□□□ 0.27
TRAF4-214ENST00000580073 IFIT1P09914 478 aaKnown RBP16.74■□□□□ 0.27
TRAF4-214ENST00000580073 NBPF7P0C2Y1 421 aaPredicted RBP16.74■□□□□ 0.27
TRAF4-214ENST00000580073 PUM3Q15397 648 aaKnown RBP16.74■□□□□ 0.27
TRAF4-214ENST00000580073 ELP3Q9H9T3 547 aa16.74■□□□□ 0.27
TRAF4-214ENST00000580073 ZBED9Q6R2W3 1325 aa16.73■□□□□ 0.27
TRAF4-214ENST00000580073 MYH2Q9UKX2 1941 aa16.73■□□□□ 0.27
TRAF4-214ENST00000580073 TCP10L2B9ZVM9 353 aa16.73■□□□□ 0.27
TRAF4-214ENST00000580073 PDE8BO95263 885 aa16.73■□□□□ 0.27
TRAF4-214ENST00000580073 SP3Q02447 781 aa16.73■□□□□ 0.27
TRAF4-214ENST00000580073 CHAF1AQ13111 956 aaPredicted RBP16.73■□□□□ 0.27
TRAF4-214ENST00000580073 DCAF15Q66K64 600 aa16.73■□□□□ 0.27
TRAF4-214ENST00000580073 R3HDMLQ9H3Y0 253 aa16.73■□□□□ 0.27
TRAF4-214ENST00000580073 EFCC1Q9HA90 598 aa16.73■□□□□ 0.27
TRAF4-214ENST00000580073 ZFYVE28Q9HCC9 887 aa16.73■□□□□ 0.27
TRAF4-214ENST00000580073 ZCCHC17Q9NP64 241 aaKnown RBP16.73■□□□□ 0.27
TRAF4-214ENST00000580073 MAP3K9P80192 1104 aa16.72■□□□□ 0.27
TRAF4-214ENST00000580073 TAF1CQ15572 869 aaPredicted RBP16.72■□□□□ 0.27
TRAF4-214ENST00000580073 FKBP1CQ5VVH2 108 aa16.72■□□□□ 0.27
TRAF4-214ENST00000580073 FBXO33Q7Z6M2 555 aa16.72■□□□□ 0.27
TRAF4-214ENST00000580073 FAM83AQ86UY5 434 aa16.72■□□□□ 0.27
TRAF4-214ENST00000580073 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.72■□□□□ 0.27
TRAF4-214ENST00000580073 KAZALD1Q96I82 304 aa16.72■□□□□ 0.27
TRAF4-214ENST00000580073 TEPSINQ96N21 525 aa16.72■□□□□ 0.27
TRAF4-214ENST00000580073 MRIQ9BWK5 157 aa16.72■□□□□ 0.27
TRAF4-214ENST00000580073 PUS3Q9BZE2 481 aaKnown RBP16.72■□□□□ 0.27
TRAF4-214ENST00000580073 AOX1Q06278 1338 aa16.71■□□□□ 0.27
TRAF4-214ENST00000580073 CCL15-CCL14A0A0B4J2E2 113 aa16.71■□□□□ 0.27
TRAF4-214ENST00000580073 SLC5A1P13866 664 aa16.71■□□□□ 0.27
TRAF4-214ENST00000580073 GJA5P36382 358 aa16.71■□□□□ 0.27
TRAF4-214ENST00000580073 VGLL4Q14135 290 aa16.71■□□□□ 0.27
TRAF4-214ENST00000580073 CCL15Q16663 113 aa16.71■□□□□ 0.27
TRAF4-214ENST00000580073 CD99L2Q8TCZ2 262 aa16.71■□□□□ 0.27
TRAF4-214ENST00000580073 ZDHHC15Q96MV8 337 aa16.71■□□□□ 0.27
TRAF4-214ENST00000580073 TMEM39BQ9GZU3 492 aa16.71■□□□□ 0.27
TRAF4-214ENST00000580073 HDAC5Q9UQL6 1122 aa16.71■□□□□ 0.27
TRAF4-214ENST00000580073 PTPN22Q9Y2R2 807 aa16.71■□□□□ 0.27
TRAF4-214ENST00000580073 KIAA0100Q14667 2235 aaKnown RBP16.7■□□□□ 0.26
TRAF4-214ENST00000580073 MGAMO43451 1857 aa16.7■□□□□ 0.26
TRAF4-214ENST00000580073 KIF22Q14807 665 aa16.7■□□□□ 0.26
TRAF4-214ENST00000580073 NBPF11Q86T75 865 aa16.7■□□□□ 0.26
TRAF4-214ENST00000580073 MRPL50Q8N5N7 158 aaKnown RBP16.7■□□□□ 0.26
TRAF4-214ENST00000580073 VGLL2Q8N8G2 317 aa16.7■□□□□ 0.26
TRAF4-214ENST00000580073 OTUD5Q96G74 571 aa16.7■□□□□ 0.26
TRAF4-214ENST00000580073 SPDYE5A6NIY4 337 aa16.69■□□□□ 0.26
TRAF4-214ENST00000580073 CETPP11597 493 aa16.69■□□□□ 0.26
TRAF4-214ENST00000580073 ALDH1L2Q3SY69 923 aa16.69■□□□□ 0.26
TRAF4-214ENST00000580073 LRRC24Q50LG9 513 aa16.69■□□□□ 0.26
TRAF4-214ENST00000580073 HHIPL2Q6UWX4 724 aa16.69■□□□□ 0.26
TRAF4-214ENST00000580073 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.69■□□□□ 0.26
TRAF4-214ENST00000580073 ERO1BQ86YB8 467 aa16.69■□□□□ 0.26
TRAF4-214ENST00000580073 ANKRD44Q8N8A2 993 aa16.69■□□□□ 0.26
TRAF4-214ENST00000580073 WDR66Q8TBY9 1149 aa16.69■□□□□ 0.26
TRAF4-214ENST00000580073 ARMC5Q96C12 935 aa16.69■□□□□ 0.26
TRAF4-214ENST00000580073 WRNIP1Q96S55 665 aa16.69■□□□□ 0.26
TRAF4-214ENST00000580073 TMEM106CQ9BVX2 250 aa16.69■□□□□ 0.26
TRAF4-214ENST00000580073 FBXO3Q9UK99 471 aa16.69■□□□□ 0.26
TRAF4-214ENST00000580073 IQSEC3Q9UPP2 1182 aaPredicted RBP16.69■□□□□ 0.26
TRAF4-214ENST00000580073 DOCK1Q14185 1865 aa16.68■□□□□ 0.26
TRAF4-214ENST00000580073 LPIN2Q92539 896 aa16.68■□□□□ 0.26
TRAF4-214ENST00000580073 MS4A4AQ96JQ5 239 aa16.68■□□□□ 0.26
TRAF4-214ENST00000580073 GNRH1P01148 92 aa16.67■□□□□ 0.26
TRAF4-214ENST00000580073 PPIL2Q13356 520 aa16.67■□□□□ 0.26
TRAF4-214ENST00000580073 SNAPC2Q13487 334 aa16.67■□□□□ 0.26
TRAF4-214ENST00000580073 SLC9C1Q4G0N8 1177 aa16.67■□□□□ 0.26
TRAF4-214ENST00000580073 BRI3BPQ8WY22 251 aa16.67■□□□□ 0.26
TRAF4-214ENST00000580073 PTPN18Q99952 460 aa16.67■□□□□ 0.26
TRAF4-214ENST00000580073 ZNF341Q9BYN7 854 aa16.67■□□□□ 0.26
TRAF4-214ENST00000580073 GNL3LQ9NVN8 582 aaKnown RBP16.67■□□□□ 0.26
TRAF4-214ENST00000580073 ZSWIM8A7E2V4 1837 aa16.67■□□□□ 0.26
TRAF4-214ENST00000580073 HTTP42858 3142 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms