RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 MTMR14Q8NCE2 650 aa23.98■■□□□ 1.43
SS18-209ENST00000578595 PRMT6Q96LA8 375 aaPredicted RBP23.98■■□□□ 1.43
SS18-209ENST00000578595 GBA2Q9HCG7 927 aaPredicted RBP23.98■■□□□ 1.43
SS18-209ENST00000578595 NOP58Q9Y2X3 529 aaKnown RBP23.98■■□□□ 1.43
SS18-209ENST00000578595 TLL2Q9Y6L7 1015 aa23.98■■□□□ 1.43
SS18-209ENST00000578595 FPGT-TNNI3KV9GXZ4 949 aa23.98■■□□□ 1.43
SS18-209ENST00000578595 LDHBP07195 334 aaKnown RBP23.97■■□□□ 1.43
SS18-209ENST00000578595 NF2P35240 595 aa23.97■■□□□ 1.43
SS18-209ENST00000578595 TTLL12Q14166 644 aaPredicted RBP23.97■■□□□ 1.43
SS18-209ENST00000578595 HSP90AB4PQ58FF6 505 aa23.97■■□□□ 1.43
SS18-209ENST00000578595 TTC39AQ5SRH9 613 aa23.97■■□□□ 1.43
SS18-209ENST00000578595 ZBED3Q96IU2 234 aaPredicted RBP23.97■■□□□ 1.43
SS18-209ENST00000578595 PAPPA2Q9BXP8 1791 aa23.97■■□□□ 1.43
SS18-209ENST00000578595 ABCF2Q9UG63 623 aa23.97■■□□□ 1.43
SS18-209ENST00000578595 RASSF10A6NK89 507 aa23.96■■□□□ 1.43
SS18-209ENST00000578595 HUNKP57058 714 aa23.96■■□□□ 1.43
SS18-209ENST00000578595 ZGPATQ8N5A5 531 aaKnown RBP23.96■■□□□ 1.43
SS18-209ENST00000578595 SUGT1Q9Y2Z0 365 aa23.96■■□□□ 1.43
SS18-209ENST00000578595 MYO5AQ9Y4I1 1855 aaKnown RBP23.96■■□□□ 1.43
SS18-209ENST00000578595 AKAP11Q9UKA4 1901 aa23.95■■□□□ 1.42
SS18-209ENST00000578595 PRDX5P30044 214 aa23.95■■□□□ 1.42
SS18-209ENST00000578595 VEGFBP49765 207 aa23.95■■□□□ 1.42
SS18-209ENST00000578595 CCDC158Q5M9N0 1113 aa23.95■■□□□ 1.42
SS18-209ENST00000578595 DBNDD2Q9BQY9 259 aa23.95■■□□□ 1.42
SS18-209ENST00000578595 TDRD3Q9H7E2 651 aaKnown RBP23.95■■□□□ 1.42
SS18-209ENST00000578595 GPR108Q9NPR9 543 aa23.95■■□□□ 1.42
SS18-209ENST00000578595 AOX1Q06278 1338 aa23.94■■□□□ 1.42
SS18-209ENST00000578595 CYP4F22Q6NT55 531 aa23.94■■□□□ 1.42
SS18-209ENST00000578595 SAPCD2Q86UD0 394 aa23.94■■□□□ 1.42
SS18-209ENST00000578595 DZIP1Q86YF9 867 aaKnown RBP23.94■■□□□ 1.42
SS18-209ENST00000578595 CCDC8Q9H0W5 538 aaPredicted RBP23.94■■□□□ 1.42
SS18-209ENST00000578595 TMOD2Q9NZR1 351 aa23.94■■□□□ 1.42
SS18-209ENST00000578595 UQCRFS1P1P0C7P4 283 aa23.93■■□□□ 1.42
SS18-209ENST00000578595 ECE1P42892 770 aa23.93■■□□□ 1.42
SS18-209ENST00000578595 HDLBPQ00341 1268 aaKnown RBP23.93■■□□□ 1.42
SS18-209ENST00000578595 AACSQ86V21 672 aa23.93■■□□□ 1.42
SS18-209ENST00000578595 CAPNS2Q96L46 248 aa23.93■■□□□ 1.42
SS18-209ENST00000578595 IL1RAPL2Q9NP60 686 aa23.93■■□□□ 1.42
SS18-209ENST00000578595 ZNF70Q9UC06 446 aaPredicted RBP23.93■■□□□ 1.42
SS18-209ENST00000578595 WDR33Q9C0J8 1336 aaKnown RBP23.92■■□□□ 1.42
SS18-209ENST00000578595 PRKG1Q13976 671 aa23.92■■□□□ 1.42
SS18-209ENST00000578595 DIXDC1Q155Q3 683 aa23.92■■□□□ 1.42
SS18-209ENST00000578595 PI16Q6UXB8 463 aa23.92■■□□□ 1.42
SS18-209ENST00000578595 SIRT2Q8IXJ6 389 aa23.92■■□□□ 1.42
SS18-209ENST00000578595 SPATA5Q8NB90 893 aa23.92■■□□□ 1.42
SS18-209ENST00000578595 DEFB129Q9H1M3 183 aa23.92■■□□□ 1.42
SS18-209ENST00000578595 MAST2Q6P0Q8 1798 aa23.92■■□□□ 1.42
SS18-209ENST00000578595 SALL1Q9NSC2 1324 aa23.91■■□□□ 1.42
SS18-209ENST00000578595 TCP10L2B9ZVM9 353 aa23.91■■□□□ 1.42
SS18-209ENST00000578595 TNFAIP1Q13829 316 aa23.91■■□□□ 1.42
SS18-209ENST00000578595 SPDYE2Q495Y8 402 aa23.91■■□□□ 1.42
SS18-209ENST00000578595 SPTY2D1Q68D10 685 aaPredicted RBP23.91■■□□□ 1.42
SS18-209ENST00000578595 JMYQ8N9B5 988 aa23.91■■□□□ 1.42
SS18-209ENST00000578595 RHPN1Q8TCX5 695 aa23.91■■□□□ 1.42
SS18-209ENST00000578595 TLR7Q9NYK1 1049 aaKnown RBP23.91■■□□□ 1.42
SS18-209ENST00000578595 HMG20BQ9P0W2 317 aa23.91■■□□□ 1.42
SS18-209ENST00000578595 PDS5AQ29RF7 1337 aaKnown RBP23.9■■□□□ 1.42
SS18-209ENST00000578595 ARID4AP29374 1257 aaPredicted RBP23.9■■□□□ 1.42
SS18-209ENST00000578595 TNNI2P48788 182 aa23.9■■□□□ 1.42
SS18-209ENST00000578595 EAF2Q96CJ1 260 aaPredicted RBP23.9■■□□□ 1.42
SS18-209ENST00000578595 CRBNQ96SW2 442 aa23.9■■□□□ 1.42
SS18-209ENST00000578595 SNRKQ9NRH2 765 aa23.9■■□□□ 1.42
SS18-209ENST00000578595 MCAMP43121 646 aa23.89■■□□□ 1.41
SS18-209ENST00000578595 CACNB3P54284 484 aa23.89■■□□□ 1.41
SS18-209ENST00000578595 ERICH6Q7L0X2 663 aa23.89■■□□□ 1.41
SS18-209ENST00000578595 KIF1BPQ96EK5 621 aa23.89■■□□□ 1.41
SS18-209ENST00000578595 ZDHHC15Q96MV8 337 aa23.89■■□□□ 1.41
SS18-209ENST00000578595 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.89■■□□□ 1.41
SS18-209ENST00000578595 DBNLQ9UJU6 430 aaKnown RBP23.89■■□□□ 1.41
SS18-209ENST00000578595 PPP2R3BQ9Y5P8 575 aa23.89■■□□□ 1.41
SS18-209ENST00000578595 RASA3Q14644 834 aa23.88■■□□□ 1.41
SS18-209ENST00000578595 HHIPL2Q6UWX4 724 aa23.88■■□□□ 1.41
SS18-209ENST00000578595 MOB2Q70IA6 237 aa23.88■■□□□ 1.41
SS18-209ENST00000578595 CLASRPQ8N2M8 674 aaKnown RBP23.88■■□□□ 1.41
SS18-209ENST00000578595 RAI14Q9P0K7 980 aa23.88■■□□□ 1.41
SS18-209ENST00000578595 TBC1D9Q6ZT07 1266 aa23.87■■□□□ 1.41
SS18-209ENST00000578595 LRP2BPQ9P2M1 347 aa23.87■■□□□ 1.41
SS18-209ENST00000578595 DAGLAQ9Y4D2 1042 aa23.87■■□□□ 1.41
SS18-209ENST00000578595 THSD7BQ9C0I4 1608 aa23.87■■□□□ 1.41
SS18-209ENST00000578595 RAB11FIP3O75154 756 aa23.86■■□□□ 1.41
SS18-209ENST00000578595 IFIT2P09913 472 aaKnown RBP23.86■■□□□ 1.41
SS18-209ENST00000578595 ZNF157P51786 506 aaPredicted RBP23.86■■□□□ 1.41
SS18-209ENST00000578595 FKBP1BP68106 108 aa23.86■■□□□ 1.41
SS18-209ENST00000578595 RGMBQ6NW40 437 aa23.86■■□□□ 1.41
SS18-209ENST00000578595 SLF2Q8IX21 1173 aa23.86■■□□□ 1.41
SS18-209ENST00000578595 HHIPL1Q96JK4 782 aa23.86■■□□□ 1.41
SS18-209ENST00000578595 ANGEL1Q9UNK9 670 aaKnown RBP23.86■■□□□ 1.41
SS18-209ENST00000578595 UBE2Q2LH0YL09 131 aa23.85■■□□□ 1.41
SS18-209ENST00000578595 AOC2O75106 756 aa23.85■■□□□ 1.41
SS18-209ENST00000578595 HSPA1AP0DMV8 641 aaKnown RBP23.85■■□□□ 1.41
SS18-209ENST00000578595 HSPA1BP0DMV9 641 aaKnown RBP23.85■■□□□ 1.41
SS18-209ENST00000578595 SUPT20HL1Q3ZLR7 823 aa23.85■■□□□ 1.41
SS18-209ENST00000578595 APOBEC3HQ6NTF7 200 aaKnown RBP23.85■■□□□ 1.41
SS18-209ENST00000578595 ARMC9Q7Z3E5 817 aa23.85■■□□□ 1.41
SS18-209ENST00000578595 MRIQ9BWK5 157 aa23.85■■□□□ 1.41
SS18-209ENST00000578595 OTOFQ9HC10 1997 aa23.85■■□□□ 1.41
SS18-209ENST00000578595 AIDAQ96BJ3 306 aa23.84■■□□□ 1.41
SS18-209ENST00000578595 FZD1Q9UP38 647 aa23.84■■□□□ 1.41
SS18-209ENST00000578595 DOCK2Q92608 1830 aa23.84■■□□□ 1.41
SS18-209ENST00000578595 ZBTB22O15209 634 aa23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms