RNA–Protein interactions for RNA: ENST00000578044.5

SMARCE1-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,184 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-213ENST00000578044 SEMA3EO15041 775 aa18.1■□□□□ 0.49
SMARCE1-213ENST00000578044 IPO8O15397 1037 aaKnown RBP18.1■□□□□ 0.49
SMARCE1-213ENST00000578044 SLC5A1P13866 664 aa18.1■□□□□ 0.49
SMARCE1-213ENST00000578044 CRKP46108 304 aa18.1■□□□□ 0.49
SMARCE1-213ENST00000578044 IREB2P48200 963 aaKnown RBP18.1■□□□□ 0.49
SMARCE1-213ENST00000578044 TNNI2P48788 182 aa18.1■□□□□ 0.49
SMARCE1-213ENST00000578044 MTX1Q13505 466 aa18.1■□□□□ 0.49
SMARCE1-213ENST00000578044 RASA3Q14644 834 aa18.1■□□□□ 0.49
SMARCE1-213ENST00000578044 HHIPL2Q6UWX4 724 aa18.1■□□□□ 0.49
SMARCE1-213ENST00000578044 WDR66Q8TBY9 1149 aa18.1■□□□□ 0.49
SMARCE1-213ENST00000578044 COPRSQ9NQ92 184 aa18.1■□□□□ 0.49
SMARCE1-213ENST00000578044 ZNF70Q9UC06 446 aaPredicted RBP18.1■□□□□ 0.49
SMARCE1-213ENST00000578044 SCAF8Q9UPN6 1271 aaKnown RBP18.1■□□□□ 0.49
SMARCE1-213ENST00000578044 F8W031 263 aaPredicted RBP18.09■□□□□ 0.49
SMARCE1-213ENST00000578044 GNAI3P08754 354 aa18.09■□□□□ 0.49
SMARCE1-213ENST00000578044 IL15P40933 162 aaPredicted RBP18.09■□□□□ 0.49
SMARCE1-213ENST00000578044 DGKZQ13574 1117 aa18.09■□□□□ 0.49
SMARCE1-213ENST00000578044 FAM83AQ86UY5 434 aa18.09■□□□□ 0.49
SMARCE1-213ENST00000578044 ANKRD13AQ8IZ07 590 aa18.09■□□□□ 0.49
SMARCE1-213ENST00000578044 TEKT1Q969V4 418 aa18.09■□□□□ 0.49
SMARCE1-213ENST00000578044 HOOK2Q96ED9 719 aa18.09■□□□□ 0.49
SMARCE1-213ENST00000578044 SLC10A4Q96EP9 437 aa18.09■□□□□ 0.49
SMARCE1-213ENST00000578044 RPAP1Q9BWH6 1393 aaPredicted RBP18.08■□□□□ 0.49
SMARCE1-213ENST00000578044 FRAT2O75474 233 aaPredicted RBP18.08■□□□□ 0.48
SMARCE1-213ENST00000578044 RBM5P52756 815 aaKnown RBP eCLIP18.08■□□□□ 0.48
SMARCE1-213ENST00000578044 CTU1Q7Z7A3 348 aaKnown RBP18.08■□□□□ 0.48
SMARCE1-213ENST00000578044 TEPSINQ96N21 525 aa18.08■□□□□ 0.48
SMARCE1-213ENST00000578044 PDS5AQ29RF7 1337 aaKnown RBP18.07■□□□□ 0.48
SMARCE1-213ENST00000578044 SALL1Q9NSC2 1324 aa18.07■□□□□ 0.48
SMARCE1-213ENST00000578044 CLRN2A0PK11 232 aa18.07■□□□□ 0.48
SMARCE1-213ENST00000578044 USP2O75604 605 aaPredicted RBP18.07■□□□□ 0.48
SMARCE1-213ENST00000578044 BCAMP50895 628 aa18.07■□□□□ 0.48
SMARCE1-213ENST00000578044 NBPF12Q5TAG4 269 aaPredicted RBP18.07■□□□□ 0.48
SMARCE1-213ENST00000578044 KLHDC4Q8TBB5 520 aa18.07■□□□□ 0.48
SMARCE1-213ENST00000578044 VEZTQ9HBM0 779 aa18.07■□□□□ 0.48
SMARCE1-213ENST00000578044 GNL3LQ9NVN8 582 aaKnown RBP18.07■□□□□ 0.48
SMARCE1-213ENST00000578044 CEP126Q9P2H0 1117 aa18.07■□□□□ 0.48
SMARCE1-213ENST00000578044 PCDHAC2Q9Y5I4 1007 aa18.07■□□□□ 0.48
SMARCE1-213ENST00000578044 TESPA1A2RU30 521 aaPredicted RBP18.06■□□□□ 0.48
SMARCE1-213ENST00000578044 TDRD3Q9H7E2 651 aaKnown RBP18.06■□□□□ 0.48
SMARCE1-213ENST00000578044 JAG2Q9Y219 1238 aa18.06■□□□□ 0.48
SMARCE1-213ENST00000578044 AOX1Q06278 1338 aa18.05■□□□□ 0.48
SMARCE1-213ENST00000578044 OTOFQ9HC10 1997 aa18.05■□□□□ 0.48
SMARCE1-213ENST00000578044 WNK4Q96J92 1243 aa18.05■□□□□ 0.48
SMARCE1-213ENST00000578044 PDE4DIPQ5VU43 2346 aa18.05■□□□□ 0.48
SMARCE1-213ENST00000578044 ATP2B3Q16720 1220 aa18.04■□□□□ 0.48
SMARCE1-213ENST00000578044 OTUD7BQ6GQQ9 843 aa18.04■□□□□ 0.48
SMARCE1-213ENST00000578044 APOBEC3HQ6NTF7 200 aaKnown RBP18.04■□□□□ 0.48
SMARCE1-213ENST00000578044 LRRFIP2Q9Y608 721 aaKnown RBP18.04■□□□□ 0.48
SMARCE1-213ENST00000578044 GPR25O00155 361 aa18.03■□□□□ 0.48
SMARCE1-213ENST00000578044 GRIK5Q16478 980 aa18.03■□□□□ 0.48
SMARCE1-213ENST00000578044 ATF7IPQ6VMQ6 1270 aa18.03■□□□□ 0.48
SMARCE1-213ENST00000578044 IFNL1Q8IU54 200 aa18.03■□□□□ 0.48
SMARCE1-213ENST00000578044 ZGPATQ8N5A5 531 aaKnown RBP18.03■□□□□ 0.48
SMARCE1-213ENST00000578044 ZNF296Q8WUU4 475 aaPredicted RBP18.03■□□□□ 0.48
SMARCE1-213ENST00000578044 MEIS3Q99687 375 aa18.03■□□□□ 0.48
SMARCE1-213ENST00000578044 TMOD2Q9NZR1 351 aa18.03■□□□□ 0.48
SMARCE1-213ENST00000578044 DENND2AQ9ULE3 1009 aa18.03■□□□□ 0.48
SMARCE1-213ENST00000578044 CCDC85CA6NKD9 419 aa18.02■□□□□ 0.48
SMARCE1-213ENST00000578044 CHAF1AQ13111 956 aaPredicted RBP18.02■□□□□ 0.48
SMARCE1-213ENST00000578044 PRKG1Q13976 671 aa18.02■□□□□ 0.48
SMARCE1-213ENST00000578044 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.02■□□□□ 0.48
SMARCE1-213ENST00000578044 IQSEC3Q9UPP2 1182 aaPredicted RBP18.02■□□□□ 0.48
SMARCE1-213ENST00000578044 AKAP2Q9Y2D5 859 aa18.02■□□□□ 0.48
SMARCE1-213ENST00000578044 TRIM27P14373 513 aa18.01■□□□□ 0.47
SMARCE1-213ENST00000578044 MAP3K9P80192 1104 aa18.01■□□□□ 0.47
SMARCE1-213ENST00000578044 CLMNQ96JQ2 1002 aa18.01■□□□□ 0.47
SMARCE1-213ENST00000578044 ZCCHC17Q9NP64 241 aaKnown RBP18.01■□□□□ 0.47
SMARCE1-213ENST00000578044 FKTNO75072 461 aa18■□□□□ 0.47
SMARCE1-213ENST00000578044 TBC1D8O95759 1140 aa18■□□□□ 0.47
SMARCE1-213ENST00000578044 PPP1R3FQ6ZSY5 799 aaPredicted RBP18■□□□□ 0.47
SMARCE1-213ENST00000578044 FAM163AQ96GL9 167 aaPredicted RBP18■□□□□ 0.47
SMARCE1-213ENST00000578044 TMEM39BQ9GZU3 492 aa18■□□□□ 0.47
SMARCE1-213ENST00000578044 HTTP42858 3142 aa18■□□□□ 0.47
SMARCE1-213ENST00000578044 TCP10L2B9ZVM9 353 aa17.99■□□□□ 0.47
SMARCE1-213ENST00000578044 IGSF3O75054 1194 aa17.99■□□□□ 0.47
SMARCE1-213ENST00000578044 MLLT1Q03111 559 aaPredicted RBP17.99■□□□□ 0.47
SMARCE1-213ENST00000578044 DCAF15Q66K64 600 aa17.99■□□□□ 0.47
SMARCE1-213ENST00000578044 FAM151AQ8WW52 585 aa17.99■□□□□ 0.47
SMARCE1-213ENST00000578044 MYH2Q9UKX2 1941 aa17.98■□□□□ 0.47
SMARCE1-213ENST00000578044 SRGAP3O43295 1099 aa17.98■□□□□ 0.47
SMARCE1-213ENST00000578044 GNAI2P04899 355 aa17.98■□□□□ 0.47
SMARCE1-213ENST00000578044 LDHBP07195 334 aaKnown RBP17.98■□□□□ 0.47
SMARCE1-213ENST00000578044 FBXO46Q6PJ61 603 aaPredicted RBP17.98■□□□□ 0.47
SMARCE1-213ENST00000578044 SLF2Q8IX21 1173 aa17.98■□□□□ 0.47
SMARCE1-213ENST00000578044 MS4A4AQ96JQ5 239 aa17.98■□□□□ 0.47
SMARCE1-213ENST00000578044 SIL1Q9H173 461 aa17.98■□□□□ 0.47
SMARCE1-213ENST00000578044 CSADQ9Y600 493 aa17.98■□□□□ 0.47
SMARCE1-213ENST00000578044 SPDYE5A6NIY4 337 aa17.97■□□□□ 0.47
SMARCE1-213ENST00000578044 IGF2BP3O00425 579 aaKnown RBP eCLIP17.97■□□□□ 0.47
SMARCE1-213ENST00000578044 MAP4K4O95819 1239 aaPredicted RBP17.97■□□□□ 0.47
SMARCE1-213ENST00000578044 GJA5P36382 358 aa17.97■□□□□ 0.47
SMARCE1-213ENST00000578044 GTF2A2P52657 109 aa17.97■□□□□ 0.47
SMARCE1-213ENST00000578044 VGLL4Q14135 290 aa17.97■□□□□ 0.47
SMARCE1-213ENST00000578044 MVPQ14764 893 aaKnown RBP17.97■□□□□ 0.47
SMARCE1-213ENST00000578044 CCDC102BQ68D86 513 aa17.97■□□□□ 0.47
SMARCE1-213ENST00000578044 OPTNQ96CV9 577 aa17.97■□□□□ 0.47
SMARCE1-213ENST00000578044 FZD1Q9UP38 647 aa17.97■□□□□ 0.47
SMARCE1-213ENST00000578044 DAGLAQ9Y4D2 1042 aa17.97■□□□□ 0.47
SMARCE1-213ENST00000578044 TNRC18O15417 2968 aaPredicted RBP17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms